Popular repositories

1. MTBseq_source MTBseq_source Public

   MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis c…

   Perl 38 21

2. HaemoSeq HaemoSeq Public

   A collection of bash starter scripts and curated reference databases for the whole genome sequencing based analysis of human-related Haemophilus isolates.

   Shell 4 1

3. binoSNP binoSNP Public

   🔍 💊 Detection of low-frequency SNPs in next-generation sequencing data of Mycobacterium tuberculosis complex strains

   Perl 1 1

4. SMaltophilia_phylo SMaltophilia_phylo Public

   Scripts used in the The phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia paper

   R 1 1

5. NTMtools NTMtools Public

   This repository contains scripts and manuals used in the paper "Delineating Mycobacterium abscessus population structure and transmission employing high-resolution core genome multilocus sequence t…

   Shell 1

6. SARSCOV2seq SARSCOV2seq Public

   Pipeline for the analysis of SARS-CoV-2 tiled amplicon sequencing data

   Perl