GitHub - nawrockie/jiffy-infernal-hmmer-scripts: Simple perl scripts for dealing with infernal and/or hmmer output/input.

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Name		Name	Last commit message	Last commit date
Latest commit History 101 Commits
README-tblout-add		README-tblout-add
ali-apos-to-uapos.pl		ali-apos-to-uapos.pl
ali-multiseq-to-singleseq.pl		ali-multiseq-to-singleseq.pl
ali-pfam-add-blank-sscons.pl		ali-pfam-add-blank-sscons.pl
ali-pfam-add-rflen-sscons.pl		ali-pfam-add-rflen-sscons.pl
ali-pfam-add-structonly-rf.pl		ali-pfam-add-structonly-rf.pl
ali-pfam-add-x-rf.pl		ali-pfam-add-x-rf.pl
ali-pfam-lowercase-rf-gap-columns.pl		ali-pfam-lowercase-rf-gap-columns.pl
ali-pfam-sindi2dot-bracket.pl		ali-pfam-sindi2dot-bracket.pl
ali-pfam2afa-sscons.pl		ali-pfam2afa-sscons.pl
ali-sscons-merge.pl		ali-sscons-merge.pl
clanin-subset.pl		clanin-subset.pl
cm-alignment-check.pl		cm-alignment-check.pl
cm-copy-evalue-parameters.pl		cm-copy-evalue-parameters.pl
cmsearch-tblout-add-tax-using-edirect.pl		cmsearch-tblout-add-tax-using-edirect.pl
cmsearch-tblout-multi-models2sfetch.pl		cmsearch-tblout-multi-models2sfetch.pl
cmsearch-tblout-prune-mdlfract.pl		cmsearch-tblout-prune-mdlfract.pl
cmsearch-tblout-prune-seqfract.pl		cmsearch-tblout-prune-seqfract.pl
cmsearch-tblout-prune.pl		cmsearch-tblout-prune.pl
cmsearch-tblout2sfetch.pl		cmsearch-tblout2sfetch.pl
cmsearch-trmF3-tblout2tblout.pl		cmsearch-trmF3-tblout2tblout.pl
esl-alipid-parse.pl		esl-alipid-parse.pl
esl-alipid-per-seq-stats.pl		esl-alipid-per-seq-stats.pl
esl-alipid-subset.pl		esl-alipid-subset.pl
esl-alistat-bpinfo-count-compensatory-and-consistent.pl		esl-alistat-bpinfo-count-compensatory-and-consistent.pl
esl-alistat-cinfo-count-mutations.pl		esl-alistat-cinfo-count-mutations.pl
esl-alistat-cinfo-rfam-ss-seqcons.pl		esl-alistat-cinfo-rfam-ss-seqcons.pl
esl-alistat-rinfo-window.pl		esl-alistat-rinfo-window.pl
esl-seqstat-a-length-prune.pl		esl-seqstat-a-length-prune.pl
esl-seqstat-a2esl-sfetch-random-subseqs.pl		esl-seqstat-a2esl-sfetch-random-subseqs.pl
esl-seqstat-a2esl-sfetch-rc.pl		esl-seqstat-a2esl-sfetch-rc.pl
esl-seqstat-indi-composition.pl		esl-seqstat-indi-composition.pl
esl-seqstat-to-cmsearch-Z-param.pl		esl-seqstat-to-cmsearch-Z-param.pl
esl-translate-rename-to-source.pl		esl-translate-rename-to-source.pl
fasta-description-prepend.pl		fasta-description-prepend.pl
fasta-remove-dups.pl		fasta-remove-dups.pl
fasta-to-subseq-fasta.pl		fasta-to-subseq-fasta.pl
gff2cmsearch-tblout.pl		gff2cmsearch-tblout.pl
hmmsearch-tblout-prune.pl		hmmsearch-tblout-prune.pl
hmmsearch2sfetch.pl		hmmsearch2sfetch.pl
infernal-tblout2gff.pl		infernal-tblout2gff.pl
nhmmer-tblout-prune.pl		nhmmer-tblout-prune.pl
nhmmer-tblout2cmsearch-tblout.pl		nhmmer-tblout2cmsearch-tblout.pl
sum-elapsed-times.pl		sum-elapsed-times.pl
tRNAscan2tblout.pl		tRNAscan2tblout.pl
tblout-add.pl		tblout-add.pl