This repository contains images, scripts, bibliographic data (.bib format) and LaTeX code for slides related to statistical tests of topologies.

Figures are either: - taken from papers (the name of the file will indicate the citation), - borrowed from Joe Felsenstein and tweaked (the files "JoeFels..."), - or created by Mark Holder

Directories

* 'lecture' : source code for slides
* 'newimages' :  image files (an unfortunate name required to 
        avoid name clashes on Mark's machine)
* 'review' : notes on the literature and references
* 'scripts' : python and r scripts for generating figures and simulations
        also contains example data files.
* 'wiki' : wiki syntax used to write lab exercises (currently in MediaWiki 
        format only)

See also:

* https://github.com/mtholder/treeTestingDemo
* http://phylo.bio.ku.edu/mephytis/index.html
* https://github.com/mtholder/mephytis