mp15 / af_analysis Public

Analysis scripts for 30x vs 15x HiSeq X WGS analysis

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Name		Name	Last commit message	Last commit date
Latest commit History 40 Commits
data		data
images		images
paper		paper
poster		poster
.gitignore		.gitignore
README.md		README.md
analysis.R		analysis.R
analysis.sh		analysis.sh
analysis_bstat.R		analysis_bstat.R
analysis_bstat_hack.R		analysis_bstat_hack.R
analysis_cmp.R		analysis_cmp.R
analysis_cmp.sh		analysis_cmp.sh
analysis_cmp_ac.R		analysis_cmp_ac.R
analysis_cmp_ac.sh		analysis_cmp_ac.sh
analysis_hack.sh		analysis_hack.sh
analysis_psc.R		analysis_psc.R
ds_call_inner.pl		ds_call_inner.pl
ds_call_inner.sh		ds_call_inner.sh
gather_lane_stats.sh		gather_lane_stats.sh
genotype_annot_inner.pl		genotype_annot_inner.pl
hla_filter.sh		hla_filter.sh
run_analysis.sh		run_analysis.sh
run_subanalysis.sh		run_subanalysis.sh
vqsr_inner.pl		vqsr_inner.pl