v1.1.0

Change Log

Improvement

• Added reverse complement option to GUI

Bug Fix

• Fixed unexpected sys.exit when calling aligner tool

v1.0.0

Major Upgrade v1.0.0

See README and document for details.

v0.4.4

Change Log

Improvement

• Added track.add_features() method

Bug Fix

• Fixed a bug that caused an error in the GUI when uploaded files contain parentheses ().

v0.4.3

Change Log

Bug Fix

• Fixed bug due to matplotlib v3.8.0 changes (#22)
• Fixed savefig() to suppress memory leak during multiple plots

v0.4.2

Change Log

Improvement

• Added resource warning message for streamlit cloud deployment

Bug Fix

• Fixed gui run error when upload filename contains space char
• Fixed mmseqs run error when protein_id contains | char
• Fixed a bug that gff.get_seqid2size() got incorrect multi-contig size

v0.4.1...v0.4.2

v0.4.1

Change Log

Improvement (GUI)

• Added genome comparison result download functionality
• Improved text contents & widget layout
• Adjusted range label padding size

Bug Fix

• Fixed feature coloring bug when facecolor tag is set

v0.4.0...v0.4.1

v0.4.0

Change Log

New Functionality

• Added GUI (Web browser) functionality using streamlit (Demo Page)

Improvement

• Improved html viewer tooltip display content
• Changed linter flake8 to ruff

v0.3.2...v0.4.0

v0.3.2

Change Log

Minor Change

• Added reverse complement option to CLI
• Added target_strand, pseudogene arguments to gff.extract_features() method
• Drop python3.7 support

v0.3.1...v0.3.2

v0.3.1

Change Log

Minor Change

• Added pseudogene option to add_genbank_features() method
• Added --pseudo, --pseudo_color option to pgv-mummer CLI (#7)

v0.3.0...v0.3.1

v0.3.0

Change Log

New Functionality

• Added GFF parser class (parser/gff.py)
• Added GFF features plot method (add_gff_features())

Minor Change

• Added facecolor_handle_func option to add_genbank_features() method
• Added ymargin option to set_sublabel() method
• Improved HTML viewer tooltip display
• Fixed duplicate colorbar display issue for same colors
• Added colorbar width, height control option to CLI (pgv-mummer, pgv-mmseqs)