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[WIP] Stix miniapp in 2D #4222

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[WIP] Stix miniapp in 2D #4222

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Commits on Jun 2, 2021

  1. Adding first draft of truly 2D version of stix miniapp

    @mlstowell
    mlstowell committed Jun 2, 2021
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  2. Implementing ProjectMatrixCoefficient in restricted ND and RT finite … 

    …elements
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    mlstowell committed Jun 2, 2021
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  3. make style

    @mlstowell
    mlstowell committed Jun 2, 2021
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  4. Instantiating restricted ND and RT spaces when appropriate

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  5. Removing extruded meshes from main application

    @mlstowell
    mlstowell committed Jun 2, 2021
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Commits on Jun 15, 2021

  1. Moving the complex phase coefficient

    @mlstowell
    mlstowell committed Jun 15, 2021
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  2. make style

    @mlstowell
    mlstowell committed Jun 15, 2021
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  3. Adding plasma subdir to makefile

    @mlstowell
    mlstowell committed Jun 15, 2021
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  4. Fixing assert

    @mlstowell
    mlstowell committed Jun 15, 2021
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  5. Merge remote-tracking branch 'origin/lo-dim-em-dev' into stix-r2d-dev

    @mlstowell
    mlstowell committed Jun 15, 2021
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Commits on Jun 29, 2021

  1. Merge remote-tracking branch 'origin/lo-dim-em-dev' into stix-r2d-dev

    @mlstowell
    mlstowell committed Jun 29, 2021
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  2. Updating copyright statements

    @mlstowell
    mlstowell committed Jun 29, 2021
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Commits on Jul 2, 2021

  1. Adding serial L2FESpace to miniapps/common

    @mlstowell
    mlstowell committed Jul 2, 2021
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  2. make style

    @mlstowell
    mlstowell committed Jul 2, 2021
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  3. Visualizing R2D fields using extruded 3D mesh

    @mlstowell
    mlstowell committed Jul 2, 2021
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Commits on Aug 5, 2021

  1. Bug fixes in ND_R2D_SegmentElement

    @mlstowell
    mlstowell committed Aug 5, 2021
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  2. Extending cold plasma classes to support 2D

    @mlstowell
    mlstowell committed Aug 5, 2021
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  3. Merge remote-tracking branch 'origin/lo-dim-em-dev' into stix-r2d-dev

    @mlstowell
    mlstowell committed Aug 5, 2021
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  4. make style

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Commits on Oct 3, 2021

  1. Changes from dh-sheath-bc-dev

    @mlstowell
    mlstowell committed Oct 3, 2021
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  2. Initial cylindrical symmetry modifications

    @mlstowell
    mlstowell committed Oct 3, 2021
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Commits on Oct 4, 2021

  1. Recording the command line in a special file

    @mlstowell
    mlstowell committed Oct 4, 2021
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  2. Adding choice of direction to pedestal profile

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    mlstowell committed Oct 4, 2021
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Commits on Oct 5, 2021

  1. Merge remote-tracking branch 'origin/lo-dim-em-dev' into stix-r2d-dev 

    # Conflicts:
#	fem/fe.cpp
#	fem/fe.hpp
#	makefile
    @mlstowell
    mlstowell committed Oct 5, 2021
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  2. make style

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    mlstowell committed Oct 5, 2021
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Commits on Oct 22, 2021

  1. Applying k-vector phase shift to Dirichlet BCs

    @mlstowell
    mlstowell committed Oct 22, 2021
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  2. Adding multi-strap antenna source function

    @mlstowell
    mlstowell committed Oct 22, 2021
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Commits on Nov 1, 2021

  1. Adding ZMUMPS support from @psocratis

    @mlstowell
    mlstowell committed Nov 1, 2021
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  2. Adding MUMPS solver to CPDSolverDH

    @mlstowell
    mlstowell committed Nov 1, 2021
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  3. Expanding linear interpolator unit tests to include R2D classes

    @mlstowell
    mlstowell committed Nov 1, 2021
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  4. Adding ComplexPhaseCoefficient

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    mlstowell committed Nov 1, 2021
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  5. Removing sinkx and coskx in favor of ComplexPhaseCoefficient

    @mlstowell
    mlstowell committed Nov 1, 2021
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  6. Generalizing MultiStrapAntennaH

    @mlstowell
    mlstowell committed Nov 1, 2021
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  7. Expanding solver type enum to include MUMPS

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    mlstowell committed Nov 1, 2021
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Commits on Nov 8, 2021

  1. Bugfix

    @mlstowell
    mlstowell committed Nov 8, 2021
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Commits on Nov 20, 2021

  1. Adding boundary integrator for ND_R2D basis

    @mlstowell
    mlstowell committed Nov 20, 2021
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  2. Adding VectorR2DCoef to aid in visualizing R2D bases

    @mlstowell
    mlstowell committed Nov 20, 2021
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  3. Adding to BFieldProfile

    @mlstowell
    mlstowell committed Nov 20, 2021
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  4. Fixing phases of source terms in DH formulation

    @mlstowell
    mlstowell committed Nov 20, 2021
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  5. Adding test meshes and use of BFieldProfile

    @mlstowell
    mlstowell committed Nov 20, 2021
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  6. Renaming EB formulation solver files

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    mlstowell committed Nov 20, 2021
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  7. Separating StixBC class into its own files

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    mlstowell committed Nov 20, 2021
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  8. Adding stix_r2d_eb

    @mlstowell
    mlstowell committed Nov 20, 2021
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  9. Adding new files to makefile

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    mlstowell committed Nov 20, 2021
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Commits on Jan 6, 2022

  1. Adding volumetric current source to container object for BCs

    @mlstowell
    mlstowell committed Jan 6, 2022
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  2. Adding region restricted integrators to ParComplexLinearForm

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    mlstowell committed Jan 6, 2022
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  3. Adding matrix coefficients to mimic cylindrical symmetry in the Maxwe… 

    …ll equations
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  4. Splitting implementation of the Maxwell equations into logical pieces… 

    … to simplify the code
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Commits on Jan 15, 2022

  1. Adding Christina's collisional profile to stix_r2d_eb

    @mlstowell
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Commits on Feb 7, 2022

  1. Adding Lp error estimator for complex valued fields

    @mlstowell
    mlstowell committed Feb 7, 2022
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  2. Adding axis of cylindrically symmetric domains to StixBCs class

    @mlstowell
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  3. Adding coefficient class for the Stix L coefficient

    @mlstowell
    mlstowell committed Feb 7, 2022
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  4. Adding coefficient profiles for WHAM initial simulations

    @mlstowell
    mlstowell committed Feb 7, 2022
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  5. Using AMR to prepare initial mesh based on error in L

    @mlstowell
    mlstowell committed Feb 7, 2022
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  6. Enforcing E_phi=0 on axis of cylindrical symmetry

    @mlstowell
    mlstowell committed Feb 7, 2022
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  7. Initial changes to support AMR based on E field calculation

    @mlstowell
    mlstowell committed Feb 7, 2022
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  8. make style

    @mlstowell
    mlstowell committed Feb 7, 2022
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  9. Improving preparation of vector fields for visualization

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    mlstowell committed Feb 7, 2022
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Commits on Feb 9, 2022

  1. Adding support for pseudovector visualization with cylindrical symmetry

    @mlstowell
    mlstowell committed Feb 9, 2022
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  2. Visualizing DivB and DivD pseudoscalars

    @mlstowell
    mlstowell committed Feb 9, 2022
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Commits on Mar 2, 2022

  1. Merge remote-tracking branch 'origin/master' into stix-r2d-dev 

    # Conflicts:
#	.gitignore
#	examples/CMakeLists.txt
#	examples/makefile
#	fem/bilininteg.cpp
#	fem/complex_fem.cpp
#	fem/complex_fem.hpp
#	fem/fe/fe_base.hpp
#	fem/fe/fe_nd.cpp
#	fem/fe/fe_nd.hpp
#	fem/fe/fe_rt.cpp
#	fem/fe/fe_rt.hpp
#	makefile
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Commits on Mar 6, 2022

  1. Adding second draft of stix_r2d_dh

    @mlstowell
    mlstowell committed Mar 6, 2022
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Commits on Mar 9, 2022

  1. Adjusting include directive to avoid build issue

    @mlstowell
    mlstowell committed Mar 9, 2022
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  2. Adding VisObject for boundary coefficients

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    mlstowell committed Mar 9, 2022
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  3. Fixing ND_R2D_Segment CalcPhys* methods

    @mlstowell
    mlstowell committed Mar 9, 2022
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  4. Switching from xposition to nu following stix2d_dh

    @mlstowell
    mlstowell committed Mar 9, 2022
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  5. make style

    @mlstowell
    mlstowell committed Mar 9, 2022
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  6. Experimenting with sheath BC in stix_r2d_dh

    @mlstowell
    mlstowell committed Mar 9, 2022
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Commits on Mar 14, 2022

  1. Merge remote-tracking branch 'origin/master' into stix-r2d-dev 

    # Conflicts:
#	.gitignore
#	examples/CMakeLists.txt
#	examples/makefile
#	fem/fe/fe_base.hpp
#	fem/fe/fe_nd.cpp
#	fem/fe/fe_nd.hpp
#	fem/fe/fe_rt.cpp
#	fem/fe/fe_rt.hpp
    @mlstowell
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Commits on Mar 17, 2022

  1. Adding preconditioner to Sheath BC solve

    @mlstowell
    mlstowell committed Mar 17, 2022
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  2. Fixing uninitialized variables in GMRES solver

    @mlstowell
    mlstowell committed Mar 17, 2022
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  3. Small fixes in stix_r2d_dh

    @mlstowell
    mlstowell committed Mar 17, 2022
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Commits on Mar 21, 2022

  1. Merge remote-tracking branch 'origin/master' into stix-r2d-dev

    @mlstowell
    mlstowell committed Mar 21, 2022
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Commits on Mar 29, 2022

  1. Adding new EQDSK reader

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    mlstowell committed Mar 29, 2022
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Commits on Mar 30, 2022

  1. Bringing up to date with dh-sheath-bc-dev

    @mlstowell
    mlstowell committed Mar 30, 2022
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  2. Distinguishing real and complex valued vector vis objects

    @mlstowell
    mlstowell committed Mar 30, 2022
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  3. Adding B field vis in stix_r2d_dh

    @mlstowell
    mlstowell committed Mar 30, 2022
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Commits on May 12, 2022

  1. Correcting the interpretation of 1D fields in EQDSK files

    @mlstowell
    mlstowell committed May 12, 2022
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Commits on May 13, 2022

  1. Supping files which don't specify SIBRY

    @mlstowell
    mlstowell committed May 13, 2022
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  2. Fixing bug related to non-square grids of PSI data

    @mlstowell
    mlstowell committed May 13, 2022
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  3. Plotting boundary and limiter as separate meshes

    @mlstowell
    mlstowell committed May 13, 2022
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Commits on May 20, 2022

  1. Adding fudge factor to remove ion cyclotron singularity

    @mlstowell
    mlstowell committed May 20, 2022
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Commits on Jun 25, 2022

  1. Generalizing initial AMR options

    @mlstowell
    mlstowell committed Jun 25, 2022
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  2. Adding new options to command line record

    @mlstowell
    mlstowell committed Jun 25, 2022
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Commits on Jun 30, 2022

  1. Adding experimental support for sheath BC

    @mlstowell
    mlstowell committed Jun 30, 2022
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Commits on Nov 11, 2022

  1. Adding a density profile to approximate a WHAM simulation

    @mlstowell
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Commits on Nov 17, 2022

  1. Merge remote-tracking branch 'origin/master' into stix-r2d-dev 

    # Conflicts:
#	makefile
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    mlstowell committed Nov 17, 2022
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Commits on Jan 23, 2023

  1. Adding SPARC related coefficients

    @mlstowell
    mlstowell committed Jan 23, 2023
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  2. Adding new coef definitions

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    mlstowell committed Jan 23, 2023
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Commits on Jan 28, 2023

  1. Adding resonance limiter to Stix coefficients

    @mlstowell
    mlstowell committed Jan 28, 2023
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  2. Fixing phase shift vector in cylindrical coordinates

    @mlstowell
    mlstowell committed Jan 28, 2023
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  3. Adding support for minority species

    @mlstowell
    mlstowell committed Jan 28, 2023
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  4. Bugfix in numbers of parameters for plasma profiles

    @mlstowell
    mlstowell committed Jan 28, 2023
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  5. Bugfix in phase shift contribution to curl curl operator

    @mlstowell
    mlstowell committed Jan 28, 2023
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  6. Bugfix in B field visualization

    @mlstowell
    mlstowell committed Jan 28, 2023
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  7. Bringing DH version up to date with EB version in terms of sources an… 

    …d B field output
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    mlstowell committed Jan 28, 2023
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Commits on Jan 30, 2023

  1. Correcting minority treatment in DH version

    @mlstowell
    mlstowell committed Jan 30, 2023
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  2. Adding resonance limiter to Stix coefs

    @mlstowell
    mlstowell committed Jan 30, 2023
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  3. New coefs and sources

    @mlstowell
    mlstowell committed Jan 30, 2023
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  4. Fixing bug in GausssLaw objects

    @mlstowell
    mlstowell committed Jan 30, 2023
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  5. Fixing SuperLU usage bug in DH solver

    @mlstowell
    mlstowell committed Jan 30, 2023
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Commits on May 25, 2023

  1. Merge remote-tracking branch 'origin/master' into stix-r2d-dev 

    # Conflicts:
#	makefile
    @mlstowell
    mlstowell committed May 25, 2023
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Commits on Apr 1, 2024

  1. Commenting unused variables

    @mlstowell
    mlstowell committed Apr 1, 2024
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  2. Merge remote-tracking branch 'origin/master' into stix-r2d-dev 

    # Conflicts:
#	makefile
    @mlstowell
    mlstowell committed Apr 1, 2024
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  3. Removing extraneous changes from GMRES implementation

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    mlstowell committed Apr 1, 2024
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  4. Updating used of MPI and GetRangeDim

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    mlstowell committed Apr 1, 2024
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  5. Fixing deprecation warnings

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    mlstowell committed Apr 1, 2024
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  6. Updating copyright dates

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    mlstowell committed Apr 1, 2024
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  7. Fixing doxygen comments

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    mlstowell committed Apr 1, 2024
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  8. Avoiding compiler warnings

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    mlstowell committed Apr 1, 2024
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Commits on Apr 2, 2024

  1. More doxygen and copyright fixes

    @mlstowell
    mlstowell committed Apr 2, 2024
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  2. Updating gitignore

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    mlstowell committed Apr 2, 2024
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  3. Adding missing header file

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    mlstowell committed Apr 2, 2024
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  4. Fixing "test" targets in makefile

    @mlstowell
    mlstowell committed Apr 2, 2024
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Commits on Apr 3, 2024

  1. Fixing ND_R2D_Segment to support embedding on 2D curves

    @mlstowell
    mlstowell committed Apr 3, 2024
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  2. Find another way to address vector fields on segments of 2D curves

    @mlstowell
    mlstowell committed Apr 3, 2024
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Commits on Apr 4, 2024

  1. Fixing compiler warning regarding unused variable

    @mlstowell
    mlstowell committed Apr 4, 2024
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