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  • Harvard Medical School
  • Boston, MA
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  1. panqc panqc Public

    A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses

    Python 13

  2. Mtb-ISEMapper Mtb-ISEMapper Public

    An end-to-end Snakemake pipeline for analysis of IS6110 transposon insertions in the M. tuberculosis genome

    Python 2

  3. farhat-lab/mtb-illumina-wgs-evaluation farhat-lab/mtb-illumina-wgs-evaluation Public

    Repository for analysis of Benchmarking the accuracy of short-read sequencing across the M. tuberculosis genome, 2022, Bioinformatics.

    Jupyter Notebook 6

  4. pupmapper pupmapper Public

    A tool for calculation of pileup mappability for any genome of interest.

    Python 2