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API: imshow make rgba the defaut stage when down-sampling
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imshow used to default to interpolating in data space.  That
makes sense for up-sampled images, but fails in odd ways for
down-sampled images.

Here we introduce a new default value for *interpolation_stage*
'antialiased', which changes the interpolation stage to 'rgba'
if the data is downsampled or upsampled less than a factor of three.
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jklymak committed Apr 15, 2024
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14 changes: 14 additions & 0 deletions doc/api/next_api_changes/behavior/28061-JMK.rst
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imshow *interpolation_stage* default changed to 'antialiased'
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

The *interpolation_stage* keyword argument `~.Axes.imshow` has a new default
value 'antialiased'. For images that are down-sampled or up-sampled less than
a factor of three, image interpolation will occur in 'rgba' space. For images
that are up-sampled by more than a factor of 3, then image interpolation occurs
in 'data' space.

The previous default was 'data', so down-sampled images may change subtly with
the new default. However, the new default also avoids floating point artifacts
at sharp boundaries in a colormap when down-sampling.

The previous behavior can achieved by changing :rc:`image.interpolation_stage`.
275 changes: 206 additions & 69 deletions galleries/examples/images_contours_and_fields/image_antialiasing.py
Original file line number Diff line number Diff line change
@@ -1,34 +1,29 @@
"""
==================
Image antialiasing
==================
Images are represented by discrete pixels, either on the screen or in an
image file. When data that makes up the image has a different resolution
than its representation on the screen we will see aliasing effects. How
noticeable these are depends on how much down-sampling takes place in
the change of resolution (if any).
When subsampling data, aliasing is reduced by smoothing first and then
subsampling the smoothed data. In Matplotlib, we can do that
smoothing before mapping the data to colors, or we can do the smoothing
on the RGB(A) data in the final image. The differences between these are
shown below, and controlled with the *interpolation_stage* keyword argument.
The default image interpolation in Matplotlib is 'antialiased', and
it is applied to the data. This uses a
hanning interpolation on the data provided by the user for reduced aliasing
in most situations. Only when there is upsampling by a factor of 1, 2 or
>=3 is 'nearest' neighbor interpolation used.
Other anti-aliasing filters can be specified in `.Axes.imshow` using the
*interpolation* keyword argument.
================
Image resampling
================
Images are represented by discrete pixels assigned color values, either on the
screen or in an image file. When a user calls `~.Axes.imshow` with a data
array, it is rare that the size of the data array exactly matches the number of
pixels allotted to the image in the figure, so Matplotlib resamples or `scales
<https://en.wikipedia.org/wiki/Image_scaling>`_ the data or image to fit. If
the data array is larger than the number of pixels allotted in the image file,
then the image will be "down-sampled" and image information will be lost.
Conversely, if the data array is smaller than the number of pixels then each
data point will get multiple pixels, and the image is "up-sampled".
In the following figure, the first data array has size (450, 450), but is
represented by far fewer pixels in the figure, and hence is down-sampled. The
second data array has size (4, 4), and is represented by far more pixels, and
hence is up-sampled.
"""

import matplotlib.pyplot as plt
import numpy as np

# %%
fig, axs = plt.subplots(1, 2, figsize=(4, 2))

# First we generate a 450x450 pixel image with varying frequency content:
N = 450
x = np.arange(N) / N - 0.5
Expand All @@ -45,71 +40,213 @@
a[:int(N / 2), :][R[:int(N / 2), :] < 0.4] = -1
a[:int(N / 2), :][R[:int(N / 2), :] < 0.3] = 1
aa[:, int(N / 3):] = a[:, int(N / 3):]
a = aa
alarge = aa

axs[0].imshow(alarge, cmap='RdBu_r')
axs[0].set_title('(450, 450) Down-sampled', fontsize='medium')

np.random.seed(19680801+9)
asmall = np.random.rand(4, 4)
axs[1].imshow(asmall, cmap='viridis')
axs[1].set_title('(4, 4) Up-sampled', fontsize='medium')

# %%
# The following images are subsampled from 450 data pixels to either
# 125 pixels or 250 pixels (depending on your display).
# The Moiré patterns in the 'nearest' interpolation are caused by the
# high-frequency data being subsampled. The 'antialiased' imaged
# still has some Moiré patterns as well, but they are greatly reduced.
# Matplotlib's `~.Axes.imshow` method has two keyword arguments to allow the user
# to control how resampling is done. The *interpolation* keyword argument allows
# a choice of the kernel that is used for resampling, allowing either `anti-alias
# <https://en.wikipedia.org/wiki/Anti-aliasing_filter>`_ filtering if
# down-sampling, or smoothing of pixels if up-sampling. The
# *interpolation_stage* keyword argument, determines if this smoothing kernel is
# applied to the underlying data, or if the kernel is applied to the RGBA pixels.
#
# There are substantial differences between the 'data' interpolation and
# the 'rgba' interpolation. The alternating bands of red and blue on the
# left third of the image are subsampled. By interpolating in 'data' space
# (the default) the antialiasing filter makes the stripes close to white,
# because the average of -1 and +1 is zero, and zero is white in this
# colormap.
# ``interpolation_stage='rgba'``: Data -> Normalize -> RGBA -> Interpolate/Resample
#
# Conversely, when the anti-aliasing occurs in 'rgba' space, the red and
# blue are combined visually to make purple. This behaviour is more like a
# typical image processing package, but note that purple is not in the
# original colormap, so it is no longer possible to invert individual
# pixels back to their data value.

fig, axs = plt.subplots(2, 2, figsize=(5, 6), layout='constrained')
axs[0, 0].imshow(a, interpolation='nearest', cmap='RdBu_r')
axs[0, 0].set_xlim(100, 200)
axs[0, 0].set_ylim(275, 175)
axs[0, 0].set_title('Zoom')

for ax, interp, space in zip(axs.flat[1:],
['nearest', 'antialiased', 'antialiased'],
['data', 'data', 'rgba']):
ax.imshow(a, interpolation=interp, interpolation_stage=space,
# ``interpolation_stage='data'``: Data -> Interpolate/Resample -> Normalize -> RGBA
#
# For both keyword arguments, Matplotlib has a default "antialiased", that is
# recommended for most situations, and is described below. Note that this
# default behaves differently if the image is being down- or up-sampled, as
# described below.
#
# Down-sampling and modest up-sampling
# ====================================
#
# When down-sampling data, we usually want to remove aliasing by smoothing the
# image first and then sub-sampling it. In Matplotlib, we can do that smoothing
# before mapping the data to colors, or we can do the smoothing on the RGB(A)
# image pixels. The differences between these are shown below, and controlled
# with the *interpolation_stage* keyword argument.
#
# The following images are down-sampled from 450 data pixels to approximately
# 125 pixels or 250 pixels (depending on your display).
# The underlying image has alternating +1, -1 stripes on the left side, and
# a varying wavenumber (`chirp <https://en.wikipedia.org/wiki/Chirp>`_) pattern
# in the rest of the image. If we zoom, we can see this detail without any
# down-sampling:

fig, ax = plt.subplots(figsize=(4, 4), layout='compressed')
ax.imshow(alarge, interpolation='nearest', cmap='RdBu_r')
ax.set_xlim(100, 200)
ax.set_ylim(275, 175)
ax.set_title('Zoom')

# %%
# If we down-sample, the simplest algorithm is to decimate the data using
# `nearest-neighbor interpolation
# <https://en.wikipedia.org/wiki/Nearest-neighbor_interpolation>`_. We can
# do this in either data space or RGBA space:

fig, axs = plt.subplots(1, 2, figsize=(5, 2.7), layout='compressed')
for ax, interp, space in zip(axs.flat, ['nearest', 'nearest'],
['data', 'rgba']):
ax.imshow(alarge, interpolation=interp, interpolation_stage=space,
cmap='RdBu_r')
ax.set_title(f"interpolation='{interp}'\nspace='{space}'")
ax.set_title(f"interpolation='{interp}'\nstage='{space}'")

# %%
# Nearest interpolation is identical in data and RGBA space, and both exhibit
# `Moiré <https://en.wikipedia.org/wiki/Moiré_pattern>`_ patterns because the
# high-frequency data is being down-sampled and shows up as lower frequency
# patterns. We can reduce the Moiré patterns by applying an anti-aliasing filter
# to the image before rendering:

fig, axs = plt.subplots(1, 2, figsize=(5, 2.7), layout='compressed')
for ax, interp, space in zip(axs.flat, ['hanning', 'hanning'],
['data', 'rgba']):
ax.imshow(alarge, interpolation=interp, interpolation_stage=space,
cmap='RdBu_r')
ax.set_title(f"interpolation='{interp}'\nstage='{space}'")
plt.show()

# %%
# Even up-sampling an image with 'nearest' interpolation will lead to Moiré
# patterns when the upsampling factor is not integer. The following image
# upsamples 500 data pixels to 530 rendered pixels. You may note a grid of
# 30 line-like artifacts which stem from the 524 - 500 = 24 extra pixels that
# had to be made up. Since interpolation is 'nearest' they are the same as a
# neighboring line of pixels and thus stretch the image locally so that it
# looks distorted.
# The `Hanning <https://en.wikipedia.org/wiki/Hann_function>`_ filter smooths
# the underlying data so that each new pixel is a weighted average of the
# original underlying pixels. This greatly reduces the Moiré patterns.
# However, when the *interpolation_stage* is set to 'data', it also introduces
# white regions to the image that are not in the original data, both in the
# alternating bands on the left hand side of the image, and in the boundary
# between the red and blue of the large circles in the middle of the image.
# The interpolation at the 'rgba' stage is more natural, with the alternating
# bands coming out a shade of purple; even though purple is not in the original
# colormap, it is what we perceive when a blue and red stripe are close to each
# other.
#
# The default for the *interpolation* keyword argument is 'antialiased' which
# will choose a Hanning filter if the image is being down-sampled or up-sampled
# by less than a factor of three. The default *interpolation_stage* keyword
# argument is also 'antialiased', and for images that are down-sampled or
# up-sampled by less than a factor of three it defaults to 'rgba'
# interpolation.
#
# Anti-aliasing filtering is needed, even when up-sampling. The following image
# up-samples 450 data pixels to 530 rendered pixels. You may note a grid of
# line-like artifacts which stem from the extra pixels that had to be made up.
# Since interpolation is 'nearest' they are the same as a neighboring line of
# pixels and thus stretch the image locally so that it looks distorted.

fig, ax = plt.subplots(figsize=(6.8, 6.8))
ax.imshow(a, interpolation='nearest', cmap='gray')
ax.set_title("upsampled by factor a 1.048, interpolation='nearest'")
plt.show()
ax.imshow(alarge, interpolation='nearest', cmap='grey')
ax.set_title("upsampled by factor a 1.17, interpolation='nearest'")

# %%
# Better antialiasing algorithms can reduce this effect:
fig, ax = plt.subplots(figsize=(6.8, 6.8))
ax.imshow(a, interpolation='antialiased', cmap='gray')
ax.set_title("upsampled by factor a 1.048, interpolation='antialiased'")
plt.show()
ax.imshow(alarge, interpolation='antialiased', cmap='grey')
ax.set_title("upsampled by factor a 1.17, interpolation='antialiased'")

# %%
# Apart from the default 'hanning' antialiasing, `~.Axes.imshow` supports a
# number of different interpolation algorithms, which may work better or
# worse depending on the pattern.
# worse depending on the underlying data.
fig, axs = plt.subplots(1, 2, figsize=(7, 4), layout='constrained')
for ax, interp in zip(axs, ['hanning', 'lanczos']):
ax.imshow(a, interpolation=interp, cmap='gray')
ax.imshow(alarge, interpolation=interp, cmap='gray')
ax.set_title(f"interpolation='{interp}'")

# %%
# A final example shows the desirability of performing the anti-aliasing at
# the RGBA stage. In the following, the data in the upper 100 rows is exactly
# 0.0, and data in the inner circle is exactly 2.0. If we perform the
# *interpolation_stage* in 'data' space and use an anti-aliasing filter (first
# panel), then floating point imprecision makes some of the data values just a
# bit less than zero or a bit more than 2.0, and they get assigned the under-
# or over- colors. This can be avoided if you do not use an anti-aliasing filter
# (*interpolation* set set to 'nearest'), however, that makes the part of the
# data susceptible to Moiré patterns much worse (second panel). Therefore, we
# recommend the default *interpolation* of 'hanning'/'antialiased', and
# *interpolation_stage* of 'rgba'/'antialiased' for most down-sampling
# situations (last panel).

a = alarge + 1
cmap = plt.get_cmap('RdBu_r')
cmap.set_under('yellow')
cmap.set_over('limegreen')

fig, axs = plt.subplots(1, 3, figsize=(7, 3), layout='constrained')
for ax, interp, space in zip(axs.flat,
['hanning', 'nearest', 'hanning', ],
['data', 'data', 'rgba']):
im = ax.imshow(a, interpolation=interp, interpolation_stage=space,
cmap=cmap, vmin=0, vmax=2)
title = f"interpolation='{interp}'\nstage='{space}'"
if ax == axs[2]:
title += '\nDefault'
ax.set_title(title, fontsize='medium')
fig.colorbar(im, ax=axs, extend='both', shrink=0.8)

# %%
# Up-sampling
# ===========
#
# If we upsample, then we can represent a data pixel by many image or screen pixels.
# In the following example, we greatly over-sample the small data matrix.

np.random.seed(19680801+9)
a = np.random.rand(4, 4)

fig, axs = plt.subplots(1, 2, figsize=(6.5, 4), layout='compressed')
axs[0].imshow(asmall, cmap='viridis')
axs[0].set_title("interpolation='antialiased'\nstage='antialiased'")
axs[1].imshow(asmall, cmap='viridis', interpolation="nearest",
interpolation_stage="data")
axs[1].set_title("interpolation='nearest'\nstage='data'")
plt.show()

# %%
# The *interpolation* keyword argument can be used to smooth the pixels if desired.
# However, that almost always is better done in data space, rather than in RGBA space
# where the filters can cause colors that are not in the colormap to be the result of
# the interpolation. In the following example, note that when the interpolation is
# 'rgba' there are red colors as interpolation artifacts. Therefore, the default
# 'antialiased' choice for *interpolation_stage* is set to be the same as 'data'
# when up-sampling is greater than a factor of three:

fig, axs = plt.subplots(1, 2, figsize=(6.5, 4), layout='compressed')
im = axs[0].imshow(a, cmap='viridis', interpolation='sinc', interpolation_stage='data')
axs[0].set_title("interpolation='sinc'\nstage='data'\n(default for upsampling)")
axs[1].imshow(a, cmap='viridis', interpolation='sinc', interpolation_stage='rgba')
axs[1].set_title("interpolation='sinc'\nstage='rgba'")
fig.colorbar(im, ax=axs, shrink=0.7, extend='both')

# %%
# Avoiding resampling
# ===================
#
# It is possible to avoid resampling data when making an image. One method is
# to simply save to a vector backend (pdf, eps, svg) and use
# ``interpolation='none'``. Vector backends allow embedded images, however be
# aware that some vector image viewers may smooth image pixels.
#
# The second method is to exactly match the size of your axes to the size of
# your data. in the following, the figure is exactly 2 inches by 2 inches, and
# the dpi is 200, so the 400x400 data is not resampled at all. If you download
# this image and zoom in an image viewer you should see the individual stripes
# on the left hand side.

fig = plt.figure(figsize=(2, 2))
ax = fig.add_axes([0, 0, 1, 1])
ax.imshow(aa[:400, :400], cmap='RdBu_r', interpolation='nearest')
plt.show()
# %%
#
# .. admonition:: References
Expand Down
13 changes: 8 additions & 5 deletions lib/matplotlib/axes/_axes.py
Original file line number Diff line number Diff line change
Expand Up @@ -5791,11 +5791,14 @@ def imshow(self, X, cmap=None, norm=None, *, aspect=None,
which can be set by *filterrad*. Additionally, the antigrain image
resize filter is controlled by the parameter *filternorm*.
interpolation_stage : {'data', 'rgba'}, default: 'data'
If 'data', interpolation
is carried out on the data provided by the user. If 'rgba', the
interpolation is carried out after the colormapping has been
applied (visual interpolation).
interpolation_stage : {'antialiased', 'data', 'rgba'}, default: 'antialiased'
If 'data', interpolation is carried out on the data provided by the user.
If 'rgba', the interpolation is carried out in RGBA-space after the
color-mapping has been applied (visual interpolation). If 'antialiased',
then 'rgba' is used if downsampling, or upsampling at a rate less than 3.
If upsampling at a higher rate, then 'data' is used.
See :doc:`/gallery/images_contours_and_fields/image_antialiasing` for
a discussion of image antialiasing.
alpha : float or array-like, optional
The alpha blending value, between 0 (transparent) and 1 (opaque).
Expand Down
24 changes: 20 additions & 4 deletions lib/matplotlib/image.py
Original file line number Diff line number Diff line change
Expand Up @@ -421,7 +421,21 @@ def _make_image(self, A, in_bbox, out_bbox, clip_bbox, magnification=1.0,
if not unsampled:
if not (A.ndim == 2 or A.ndim == 3 and A.shape[-1] in (3, 4)):
raise ValueError(f"Invalid shape {A.shape} for image data")
if A.ndim == 2 and self._interpolation_stage != 'rgba':

# if antialiased, this needs to change as window sizes
# change:
interpolation_stage = self._interpolation_stage
if interpolation_stage == 'antialiased':
pos = np.array([[0, 0], [A.shape[1], A.shape[0]]])
disp = t.transform(pos)
dispx = np.abs(np.diff(disp[:, 0])) / A.shape[1]
dispy = np.abs(np.diff(disp[:, 1])) / A.shape[0]
if (dispx < 3) or (dispy < 3):
interpolation_stage = 'rgba'
else:
interpolation_stage = 'data'

if A.ndim == 2 and interpolation_stage == 'data':
# if we are a 2D array, then we are running through the
# norm + colormap transformation. However, in general the
# input data is not going to match the size on the screen so we
Expand Down Expand Up @@ -552,7 +566,7 @@ def _make_image(self, A, in_bbox, out_bbox, clip_bbox, magnification=1.0,
cbook._setattr_cm(self.norm, vmin=s_vmin, vmax=s_vmax):
output = self.norm(resampled_masked)
else:
if A.ndim == 2: # _interpolation_stage == 'rgba'
if A.ndim == 2: # interpolation_stage == 'rgba'
self.norm.autoscale_None(A)
A = self.to_rgba(A)
alpha = self._get_scalar_alpha()
Expand Down Expand Up @@ -787,12 +801,14 @@ def set_interpolation_stage(self, s):
Parameters
----------
s : {'data', 'rgba'} or None
s : {'data', 'rgba', 'antialiased'} or None
Whether to apply up/downsampling interpolation in data or RGBA
space. If None, use :rc:`image.interpolation_stage`.
If 'antialiased' we will check upsampling rate and if less
than 3 then use 'rgba', otherwise use 'data'.
"""
s = mpl._val_or_rc(s, 'image.interpolation_stage')
_api.check_in_list(['data', 'rgba'], s=s)
_api.check_in_list(['data', 'rgba', 'antialiased'], s=s)
self._interpolation_stage = s
self.stale = True

Expand Down

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