v3.4.1

Adds informative error message on missing input file

v3.4.0

Implements random seeds for alignment kernel and expands documentation

v3.3.4

Solved an infinite loop for low-quality sequences

v3.3.3

Solved a minor issue with @ksize headers for alignment kernel

v3.3.1

Release v3.3.1

This is the release used in “Nonpareil 3: Fast Estimation of
Metagenomic Coverage and Sequence Diversity”

v3.2

v3.2

v3.1.1

Important change on plotting with -T kmer

v3.1, novel kmer kernel

• Implements the novel kmer kernel (-T kmer)
• Simplifies help messages and documentation
• Updates R code for stability

v2.4.1 (v2.4r1)

v2.4.01

Old binaries removed

v2.4, Nonpareil diversity index

• Subsampling now defaults to logarithmic.
• Nonpareil diversity.
• Experimental dataset comparisons.