animal gut metagenome assembly

Code associated with the animal gut metagenome assembly project

Citation

Youngblut, Nicholas D., Jacobo de la Cuesta-Zuluaga, Georg H. Reischer, Silke Dauser, Nathalie Schuster, Chris Walzer, Gabrielle Stalder, Andreas Farnleitner, and Ruth E. Ley. 2020. “Large Scale Metagenome Assembly Reveals Novel Animal-Associated Microbial Genomes, Biosynthetic Gene Clusters, and Other Genetic Diversity.” bioRxiv. https://doi.org/10.1101/2020.06.05.135962

Dependencies

• Linux/Unix
• Jupyter
• Conda & nb-conda (for use of conda with Jupyter notebooks)
• See Jupyter notebooks for R packages used for each analysis
• For versions, see the sessionInfo() information at the end of each notebook
  • All see Youngblut et al.,

Raw data

• Raw data is available in Youngblut et al.,

Contact

Nick Youngblut (nyoungblut@tubingen.mpg.de)