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lemieuxl committed May 19, 2023
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8 changes: 1 addition & 7 deletions README.md
@@ -1,18 +1,16 @@
[![Build Status](https://github.com/lemieuxl/pyplink/actions/workflows/python-tests.yml/badge.svg?branch=master)](https://github.com/lemieuxl/pyplink/actions)
[![PyPI version](https://badge.fury.io/py/pyplink.svg)](http://badge.fury.io/py/pyplink)


# pyplink - Module to process Plink's binary files

`PyPlink` is a Python module to read and write Plink's binary files. Short
documentation available at
[https://lemieuxl.github.io/pyplink/](https://lemieuxl.github.io/pyplink/).


## Dependencies

The tool requires a standard [Python](http://python.org/) installation (2.7 and
3.3 or higher are supported) with the following modules:
3.7 or higher are supported) with the following modules:

1. [numpy](http://www.numpy.org/) version 1.8.2 or latest
2. [pandas](http://pandas.pydata.org/) version 0.17.1 or latest
Expand All @@ -21,7 +19,6 @@ The tool requires a standard [Python](http://python.org/) installation (2.7 and
The tool has been tested on *Linux* only, but should work on *MacOS* and
*Windows* operating systems as well.


## Installation

Using `pip`:
Expand All @@ -44,7 +41,6 @@ To add the channel, perform the following command:
conda config --add channels http://statgen.org/wp-content/uploads/Softwares/pyplink
```


### Updating

To update the module using `pip`:
Expand All @@ -63,7 +59,6 @@ conda update pyplink
conda update pyplink -c http://statgen.org/wp-content/uploads/Softwares/pyplink
```


## Testing

To test the module, just perform the following command:
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OK
```


## Example

The following
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12 changes: 7 additions & 5 deletions setup.py
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"""Setup."""
#!/usr/bin/env python

# How to build source distribution
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MAJOR = 1
MINOR = 3
MICRO = 5
MICRO = 6
VERSION = "{}.{}.{}".format(MAJOR, MINOR, MICRO)


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"Programming Language :: Python",
"Programming Language :: Python :: 2.7",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.3",
"Programming Language :: Python :: 3.4",
"Programming Language :: Python :: 3.5",
"Programming Language :: Python :: 3.6",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"License :: OSI Approved :: MIT License",
"Topic :: Scientific/Engineering :: Bio-Informatics"],
keywords="bioinformatics format Plink binary",
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