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  • Massachusetts Institute of Technology
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kentoabeywardane/README.md

👋 Hi, I'm Kento Abeywardane

I'm a Chemical Engineering and Computing PhD student at MIT currently in the Coley Research Group working on 3D ligand-based generative drug design.

Previously, I graduated with a Master's in Data-Enabled Computational Engineering and Sciences (DECES) and a Bachelor's in Chemical Engineering at Brown University where I worked in the Goldsmith Lab for Chemical Kinetics. My master's thesis was a culmination of my undergraduate DFT and coupled cluster work with PFOA and GenX compounds where I developed a package ($\texttt{autoCBH}$) that automatically computes accurate heats of formation for large molecules by utilizing the error-cancelling connectivity-based hierarchy (CBH) method. In the Ault Fluids Lab I worked on non-equillibrium MD simulations to investigate diffusiophoresis of proteins and how that may impact transport, stability, and function.
  • 🌱 My technical interests:

    • Deep Learning with a focus in 3D and equivariance
    • Quantum Chemistry Software
    • Molecular Dynamics and Mechanics
  • 📫 Reach me at: kento@mit.edu

Connect with me:

kentoabeywardane Kento Twitter


Here are some projects that I've worked on:

Automated CBH Scheme

$\texttt{autoCBH}$: Automated Connectivity-Based Hierarchy (CBH) Schema Generation and ∆Hf Calculation

SBINN

Physics-Informed Neural Networks (PINNs) to predict parameters of a Glucose-Insulin interaction ODE model (SBINNs)

Protein Diffusiophoresis

Protein Diffusiophoresis with Molecular Dynamics

Style transfer model Generated image results

Generation of Diverse Image Data Using Style Transfer (Deep Learning) to Debias Melanoma Classification Models

2D Flow Through Reactor with Catalytic Chemistry

2D Flow Through Reactor with Catalytic Chemistry

COVID-19: Modeling In-Host Viral and Innate Immune System Dynamics

COVID-19: Modeling In-Host Viral and Innate Immune System Dynamics

Saturated, Superheated and Compressed Water Property Calculator GUI

Steam Table Calculator


Languages and Tools:

matlab comsol matlab matlab molpro openmm matlab pandas python python scikit_learn seaborn tensorflow

Popular repositories

  1. SteamTableCalculator SteamTableCalculator Public

    Calculates properties of water using compressed/saturated/superheated water tables.

    Jupyter Notebook 4

  2. H2O2-combustion-reactors H2O2-combustion-reactors Public

    Projects to model the catalytic combustion of a hydrogen-oxygen system flowing through a 1D plug flow reactor and a 2D rectangular reactor.

    Jupyter Notebook 3 1

  3. COVID19-In-Host-Viral-Load-Modeling COVID19-In-Host-Viral-Load-Modeling Public

    COVID-19: Modeling In-Host Viral and Innate Immune System Dynamics

    Jupyter Notebook 1 1

  4. NFL2021-defensive-analysis NFL2021-defensive-analysis Public

    Our objective was to analyze defensive trends towards the end of the game. Specifically we thought it would be interesting to look at situations where a team is leading by 4-8 points with 4 minutes…

    Jupyter Notebook

  5. kentoabeywardane kentoabeywardane Public

    Config files for my GitHub profile.

  6. 3D-EMGP 3D-EMGP Public

    Forked from jiaor17/3D-EMGP

    Python