GitHub - julie-sullivan/biodata: Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics

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Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics

Apache-2.0 license

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Name		Name	Last commit message	Last commit date
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.github/workflows		.github/workflows
biodata-external		biodata-external
biodata-formats		biodata-formats
biodata-models		biodata-models
biodata-tools		biodata-tools
.gitignore		.gitignore
LICENSE		LICENSE
README		README
pom.xml		pom.xml

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biodata
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BioData is a Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics.

Its aim is to keep applications as agnostic as possible from the file formats they receive as input. This way, analysis can be conducted on
data retrieved from very different files. In the context of variant analysis, those could be the VCF and GVF formats.

At the same time, information must not be lost, so the Java models are flexible enough to store any fields specific to a certain format.