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Working from lab
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Pinned

  1. PanGraph-DB PanGraph-DB Public

    Artifact corresponding to the PanGraph-DB framework for performing complex multi-pangenome analyses using a graph database system.

    Jupyter Notebook 2

  2. labgem/PPanGGOLiN labgem/PPanGGOLiN Public

    Build a partitioned pangenome graph from microbial genomes

    Python 218 24

  3. pirovc/genome_updater pirovc/genome_updater Public

    Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

    Shell 132 13

  4. mdmparis/defense-finder mdmparis/defense-finder Public

    Systematic search of all known anti-phage systems.

    Python 65 12