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josegcpa/README.md

Hi! I’m José Guilherme de Almeida, a post-doctoral researcher with the Computational Clinical Imaging Group at the Champalimaud Foundation. I am interested in developing robust predictive methods for (semi-)automated diagnosis and prognosis from clinical images and data.

Previously, I did my PhD with Moritz Gerstung and George S. Vassiliou at the EMBL-EBI and my MSc thesis with Irina Moreira at Universidade de Coimbra.

I am interested in deep-learning, computer vision and computational oncobiology. I am also a big fan of data visualization (i.e. Pure Ideology!, one of my favourite projects) and do some musical production on my free time.

Pinned

  1. haemorasis haemorasis Public

    Blood cell detection pipeline in peripheral blood smears

    Python 6 1

  2. clonal_dynamics clonal_dynamics Public

    Code repository for the longitudinal and phylodynamic analysis in "The longitudinal dynamics and natural history of clonal haematopoiesis"

    R 3 1

  3. wbs-prediction wbs-prediction Public

    Code repository for project focusing on blood cell detection and diagnostic prediction from peripheral blood slides

    R 1 1

  4. labelling-server labelling-server Public

    Local flask server to label images with a database in sqlite3

    HTML

  5. torch_nlm torch_nlm Public

    PyTorch-based implementation of non-local means with GPU support.

    Jupyter Notebook 4 1

  6. sondagens sondagens Public

    Ferramenta para análise de sondagens (em português)

    R 2