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Achievement: Starstruckx3Achievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor
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Achievements

Achievement: Starstruckx3Achievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor
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Organizations

@qfo @etetoolkit @TreeViz @eggnogdb @compgenomicslab
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Pinned

  1. etetoolkit/ete etetoolkit/ete Public

    Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the …

    Python 759 216

  2. eggnogdb/eggnog-mapper eggnogdb/eggnog-mapper Public

    Fast genome-wide functional annotation through orthology assignment

    Python 537 106

  3. etetoolkit/cookbook etetoolkit/cookbook Public

    HTML 17 9

  4. eggnogdb/emapper-benchmark eggnogdb/emapper-benchmark Public

    Raw data and scripts used to benchmark eggnog-mapper. Analysis and additional tests cases are provided as a python notebook.

    Jupyter Notebook 21 6

  5. etetoolkit/treematcher etetoolkit/treematcher Public

    Search flexible patterns within tree structures using regular expression like syntax.

    Python 9 12

  6. test_branch_support_after_tree_rerooting test_branch_support_after_tree_rerooting Public

    Additional test cases of branch support rearrangements after tree re-rooting inspired by http://biorxiv.org/content/early/2015/12/25/035360 (APE, dendropy, biopython, ete3, newick-utilities, bioperl)

    R 2 1