mtRNA-seq

Code for the following paper:

Wang G, Yang E, Mandhan I, Brinkmeyer-Langford CL, Cai JJ. Population-level expression variability of mitochondrial DNA-encoded genes in humans. Eur J Hum Genet. 2014 Sep;22(9):1093-9. doi: 10.1038/ejhg.2013.293. PubMed PMID: 24398800; PubMed Central PMCID: PMC4135407.

https://www.ncbi.nlm.nih.gov/pubmed/24398800

Name		Name	Last commit message	Last commit date
Latest commit History 9 Commits
CEU_mt.gtf		CEU_mt.gtf
CEU_mtDNA.fasta		CEU_mtDNA.fasta
README.md		README.md
SRR314794_Mitochondria_genes.fpkm_tracking		SRR314794_Mitochondria_genes.fpkm_tracking
SRR314795_Mitoplast_genes.fpkm_tracking		SRR314795_Mitoplast_genes.fpkm_tracking
WGCNA.r		WGCNA.r
WGCNA_results.zip		WGCNA_results.zip
YRI_mt.gtf		YRI_mt.gtf
YRI_mtDNA.fasta		YRI_mtDNA.fasta
correlated expression between mtDNA and nDNA-encoded genes in CEU.xlsx		correlated expression between mtDNA and nDNA-encoded genes in CEU.xlsx
correlated expression between mtDNA and nDNA-encoded genes in YRI.xlsx		correlated expression between mtDNA and nDNA-encoded genes in YRI.xlsx
modules_MCL.txt		modules_MCL.txt
modules_power_5.txt		modules_power_5.txt
modules_power_6_default.txt		modules_power_6_default.txt
modules_power_7.txt		modules_power_7.txt
modules_wgcna.m		modules_wgcna.m
mtDNA_copy_number_from_1000G_project.m		mtDNA_copy_number_from_1000G_project.m
tophat_cufflinks_CEU.pl		tophat_cufflinks_CEU.pl
tophat_cufflinks_YRI.pl		tophat_cufflinks_YRI.pl

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mtRNA-seq

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