Popular repositories

1. harmony harmony Public

   Fast, sensitive and accurate integration of single-cell data with Harmony

   R 496 96

2. presto presto Public

   Fast Wilcoxon and auROC

   Jupyter Notebook 138 33

3. symphony symphony Public

   Efficient and precise single-cell reference atlas mapping with Symphony

   Jupyter Notebook 94 22

4. LISI LISI Public

   Methods to compute Local Inverse Simpson's Index (LISI)

   R 53 4

5. HLA-TAPAS HLA-TAPAS Public

   HLA-TAPAS pipeline for HLA association and fine-mapping studies

   Jupyter Notebook 45 19

6. cna cna Public

   Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-cell datasets.

   Python 45 5