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Extracting Patients' information from clinical notes and export them to an OMOP CDM database.

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ieeta-pt/DrAC

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Build Status License: GPL v3

cn-to-cdm

DrAC - Drug Annotator for Common data model

A solution for extracting Patients' information from clinical notes and exporting it to an OMOP CDM database.

New Features!

  • Annotate medication information in clinical notes
  • Harmonise the resulting information into their standard definition
  • Store extracted drug information into the OMOP CDM

Documentation

More documentation about the system is available here.

Team

  • João R. Almeida12
  • João F. Silva1
  • Sérgio Matos1
  • José L. Oliveira1
  1. University of Aveiro, Dept. Electronics, Telecommunications and Informatics (DETI / IEETA), Aveiro, Portugal
  2. University of A Coruña, Dept. of Information and Communications Technologies, A Coruña, Spain

Cite

Please cite the following, if you use DrAC in your work:

João Rafael Almeida, João Figueira Silva, Sérgio Matos, José Luís Oliveira, A two-stage workflow to extract and harmonize drug mentions from clinical notes into observational databases, Journal of Biomedical Informatics, Volume 120, 2021, 103849, ISSN 1532-0464, DOI: 10.1016/j.jbi.2021.103849

Issues

Please let us know if there are any issues.

License

DrAC is under GPL-3.0 license. For more information, click here.