Pre-print update release

Highlights

• traitar show command implemented to inspect phenotype classification models
• Added several options to customize the output of traitar phenotype e.g. omit the dendrograms for phenotypes or samples in the output heat map
• PhenotypeCollection class implements a representation of a collection of phenotypes and supports manipulation of PhenotypeCollections
• Docker container available from Docker hub https://hub.docker.com/r/aweimann/traitar/ with Dockerfile on gitHub
• traitar annotate command implemented to run annotation wo/ phenotyping

Hotfix: Pfam annotation fixed, hmm2gff.py execution fixed

• Got rid of duplicate column names in the Pfam data frame, which cause a problem in pandas-0.13.1
• Fixed feature track generation, hmm2gff.py was not properly included as executable

Hotfix

• fixed sample data processing bug in from_nucleotides mode
• added cite info

Traitar @ pypi

• First version published at pypi
• README.rst for showing in pypi
• Workflow image in the README

Public release of traitar

This is the first public release of traitar.