Discussions

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  Species not found in gene family

  arunsethuraman asked Mar 23, 2021 in Q&A · Answered

  

  

  

  

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  Running simulation to choose best model

  timeforthemoonnight asked Apr 15, 2024 in Q&A · Closed · Unanswered

  

  

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  How to order tree with separate lambdas

  timeforthemoonnight asked Apr 4, 2024 in Q&A · Answered

  

  

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  Step-by-step best practices for CAFE5

  adeoliveira86 started Feb 14, 2024 in General

  

  

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  Missing Gene Families

  Paul-Donat asked Feb 1, 2024 in Q&A · Unanswered

  

  

  

  

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  RE: Signifcant but have "+0" change

  Malabady asked Mar 29, 2024 in Q&A · Unanswered

  

  

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  terminate called after throwing an instance of 'std::out_of_range'

  wh44496 asked Mar 24, 2024 in Q&A · Answered

  

  

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  After multiple cycles of deleting families, rerunning cafe5 still reports errors. And some erroes with lowering the lambda value ( 0.0001 )

  MYP0130 asked Mar 12, 2024 in Q&A · Unanswered

  

  

  

  

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  Need help finding a summary output file

  rosspdu asked Apr 3, 2024 in Q&A · Answered

  

  

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  Is there exist correlation between gene family expansion and gene copy number increase?

  wjl-cpu asked Jan 19, 2024 in Q&A · Answered

  

  

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  How to compare the likelihood in two models?

  YuzhouGong asked Jan 28, 2024 in Q&A · Answered

  

  

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  Determining which amount of lambdas is best

  hunterkwalt asked Nov 28, 2023 in Q&A · Answered

  

  

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  Questions about expanding and contracting genes on tree branches and species nodes

  Wenwen012345 asked Jan 2, 2024 in Q&A · Answered

  

  

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  Failed to initialize any reasonable values

  sophie-03 asked Oct 18, 2023 in Q&A · Answered

  

  

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  how to compare likelihoods of lambda models

  chun-he-316 asked Nov 6, 2023 in Q&A · Answered

  

  

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  Build error: undefined reference to std::regex_iterator

  davidzxs123344 asked Sep 11, 2023 in Q&A · Answered

  

  

  

  

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  what is the use of simulated data?

  suncpark asked Oct 13, 2023 in Q&A · Answered

  

  

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  Memory requirements

  MWSchmid asked Oct 2, 2023 in Q&A · Answered

  

  

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  Nelson-Meads optimizer

  jaredbernard asked Sep 15, 2023 in Q&A · Answered

  

  

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  Families with largest size differentials

  Xiaojun928 started Jul 2, 2020 in General

  

  

  

  

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  1.1

  benfulton announced Apr 17, 2023 in Announcements

  

  

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  The value of k

  wjq1981 asked Aug 23, 2023 in Q&A · Closed · Unanswered

  

  

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  outlier gene families

  marcelauliano asked Apr 3, 2023 in Q&A · Answered

  

  

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  Identifying specific expanded genes

  romseg asked Jun 29, 2023 in Q&A · Answered

  

  

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  orthogroups of expansions/contractions

  Rhia15 asked Jun 22, 2023 in Q&A · Answered

  

  

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