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Test SRV quotient metric on shapes of objects #1934

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@alebrigant alebrigant commented Jan 19, 2024

@luisfpereira @MMalikT @ninamiolane This PR starts a notebook that should ultimately become the new version of the shape analysis notebook. The data come from https://2dshapesstructure.github.io/. The goal is to showcase the tools of shape analysis on examples where we can visually evaluate the result (how credible is the geodesic between two birds or two dogs?). These simple examples can serve as benchmark to evaluate the alignment methods. We can already see that dynamic programming performs better than the other aligner, and we should probably focus our efforts on that method, making it work well on closed curves.

The PR also removes the Euler step in the iterative horizontal geodesic algorithm and replaces it with a sort.

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@alebrigant alebrigant marked this pull request as draft January 19, 2024 15:58
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codecov bot commented Jan 19, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (694a9b0) 87.30% compared to head (e015c58) 90.44%.
Report is 20 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #1934      +/-   ##
==========================================
+ Coverage   87.30%   90.44%   +3.14%     
==========================================
  Files         143      142       -1     
  Lines       13626    12916     -710     
==========================================
- Hits        11895    11680     -215     
+ Misses       1731     1236     -495     
Flag Coverage Δ
autograd 86.67% <100.00%> (-0.07%) ⬇️
numpy 89.20% <100.00%> (?)
pytorch ?

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