gemma-wrapper 0.99.6

ChangeLog v0.99.6

Important bug fix release!!

• Fixed bug that had creeped in and always returned the same hash for all runs (terrible)
• Zoomed in on tests to make sure this won't happen again
• Found another potential disaster with too long a command line for parallel jobs

gemma-wrapper 0.99.4

ChangeLog v0.99.4

• Fixed problem of incomplete cache files by introducing parallel --joblog
• Adding locking so the exact same command does not run twice - with a risk of overwriting output files

gemma-wrapper 0.99.3

ChangeLog v0.99.3 (20210822)

• Fetch chromosome names from the annotation file - working of --loco switch changed!
• Use --chromosomes switch to override which chromosomes to compute
• Also allow for parallel GWA compute of non-LOCO (unLOCO?)
• Added metrics page

ChangeLog v0.99.2 (20210808)

• Use isolated tmpdir for GEMMA and don't overwrite output files if
  they appeared during run (make it more transactional)
• Run GEMMA in parallel for LOCO with 5x speedups

gemma-wrapper 0.99.1

Added support for GNU parallel

Bug fix release

This is a bug fix release with added documentation for running permutations. Also K is no longer recomputed with
different (missing) phenotypes as GEMMA handles reduction of K by default anyway.

Install using Ruby gems.

Permutations added

Gemma with support for permutations and LOCO with caching

Initial release of gemma-wrapper

• LOCO looping over chromosomes
• Full caching for K matrices
• Caching for LOCO GWA
• JSON output (and input for GWA)
• Also available as Ruby gem, see https://rubygems.org/gems/bio-gemma-wrapper