Automated workflow for incorporation and evaluation of data uncertainty in ecological networks with autoLIMR

autoLIMR

The goal of autoLIMR is to facilitate the inclusion of data uncertainty in ecological models. autoLIMR does this by:

1. Automated construction of input files from network data, directly compatible with R packages LIM and limSolve

2. Calculation of multiple plausible network configuration using linear inverse modelling and Markov Chain Monte Carlo (LIM-MCMC), and

3. Evaluation of model quality using several visual and statistical MCMC convergence diagnostics.

Installation

You can install the latest version of autoLIMR from GitHub with:

# install.packages("devtools")
devtools::install_github("gemmagerber/autoLIMR")