ad_denoise

This package provides the tools necessary to train a neural network to denoise synchrotron x-ray area detector images.

Source code	https://github.com/garryod/ad_denoise
Documentation	https://garryod.github.io/ad_denoise
Releases	https://github.com/garryod/ad_denoise/releases

Model training can be performed using the command below:

python -m ad_denoise train my_config.yaml

Where my_config.yaml is as so:

max_epochs: 50
model:
    Noise2Self:
        network:
            Gaussian:
                kernel_half_width: 3
                train_dataset:
                    Hdf5ADImagesDataset:
                        data_paths:
                        - /dls/i22/data/2022/cm31149-3/Denoising/i22-629817.nxs
                        frame_key: entry1/detector/data
                        count_times_key: entry1/instrument/detector/count_time
                        mask_path: /dls/i22/data/2022/cm31149-3/processing/SAXS_mask.nxs
                        mask_key: entry/mask/mask
                val_dataset:
                    InputTargetDataset:
                        input:
                            Hdf5ADImagesDataset:
                                data_paths:
                                - /dls/i22/data/2022/cm31149-3/Denoising/i22-629817.nxs
                                frame_key: entry1/detector/data
                                count_times_key: entry1/instrument/detector/count_time
                                mask_path: /dls/i22/data/2022/cm31149-3/processing/SAXS_mask.nxs
                                mask_key: entry/mask/mask
                        target:
                            Hdf5ADImagesDataset:
                                data_paths:
                                - /dls/i22/data/2022/cm31149-3/Denoising/i22-629822.nxs
                                - /dls/i22/data/2022/cm31149-3/Denoising/i22-629823.nxs
                                frame_key: entry1/detector/data
                                count_times_key: entry1/instrument/detector/count_time
                                mask_path: /dls/i22/data/2022/cm31149-3/processing/SAXS_mask.nxs
                                mask_key: entry/mask/mask

See https://garryod.github.io/ad_denoise for more detailed documentation.