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Add muon tools and tests [WIP] #5872

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ivelet
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@ivelet ivelet commented Mar 15, 2024

FOR CONTRIBUTOR:

  • [x ] - I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
  • [x ] - License permits unrestricted use (educational + commercial)
  • [ x] - This PR adds a new tool or tool collection
  • - This PR updates an existing tool or tool collection
  • - This PR does something else (explain below)

@@ -0,0 +1,87 @@
<tool id="assign_cell_type_labels_mudata" name="Assign Cell Type Labels for MuData" version="0.1.0">
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please add a profile version.

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<tool id="assign_cell_type_labels_mudata" name="Assign Cell Type Labels for MuData" version="0.1.0">
<tool id="assign_cell_type_labels_mudata" name="Assign Cell Type Labels for MuData" version="0.1.0" profile="22.05">

]]></configfile>
</configfiles>
<inputs>
<param name="rna_atac_input" type="data" format="h5mu" label="RNA ATAC Data Matrix"/>
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this needs to be a Galaxy datatype. What is h5mu? N normal hdf5 format?

<inputs>
<param name="mudata_input" type="data" format="h5mu" label="MuData input file to run processing" help="(.h5mu)"/>
<conditional name="method">
<param argument="method" type="select" label="Method used for processing">
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here is something off with the alignment of text, please try https://github.com/galaxyproject/galaxy-language-server this can also reformat your file automatically ...

@pavanvidem
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This was an old work from @ivelet. Please do not review it already. I will fix this in the next weeks.

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3 participants