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Refactor unit tests for TempFilesSource
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davelopez committed Apr 26, 2024
1 parent d9e813a commit 1c0988f
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Showing 2 changed files with 32 additions and 29 deletions.
5 changes: 0 additions & 5 deletions test/unit/files/temporary_file_sources_conf.yml

This file was deleted.

56 changes: 32 additions & 24 deletions test/unit/files/test_temp.py
Original file line number Diff line number Diff line change
@@ -1,40 +1,42 @@
import os
import shutil
import tempfile
from typing import List

import pytest

from galaxy.files import ConfiguredFileSources
from galaxy.files.sources import FilesSource
from galaxy.files.plugins import FileSourcePluginsConfig
from galaxy.files.sources.temp import TempFilesSource
from galaxy.files.unittest_utils import (
setup_root,
TestConfiguredFileSources,
)
from ._util import (
assert_realizes_contains,
configured_file_sources,
user_context_fixture,
)

SCRIPT_DIRECTORY = os.path.abspath(os.path.dirname(__file__))
FILE_SOURCES_CONF = os.path.join(SCRIPT_DIRECTORY, "temporary_file_sources_conf.yml")

ROOT_URI = "temp://test1"
ROOT_PATH = "/tmp/test1"
TEMP_PLUGIN = {
"type": "temp",
"id": "test1",
"doc": "Test temporal file source",
"writable": True,
}


@pytest.fixture(scope="session")
def file_sources() -> ConfiguredFileSources:
file_sources = configured_file_sources(FILE_SOURCES_CONF)
def file_sources() -> TestConfiguredFileSources:
file_sources = _configured_file_sources()
return file_sources


@pytest.fixture(scope="session")
def temp_file_source(file_sources: ConfiguredFileSources) -> FilesSource:
def temp_file_source(file_sources: TestConfiguredFileSources) -> TempFilesSource:
file_source_pair = file_sources.get_file_source_path(ROOT_URI)
file_source = file_source_pair.file_source
_populate_test_scenario(file_source)
return file_source


def test_file_source(file_sources: FilesSource):
def test_file_source(file_sources: TestConfiguredFileSources):
assert_realizes_contains(file_sources, f"{ROOT_URI}/a", "a")
assert_realizes_contains(file_sources, f"{ROOT_URI}/b", "b")
assert_realizes_contains(file_sources, f"{ROOT_URI}/c", "c")
Expand All @@ -43,17 +45,17 @@ def test_file_source(file_sources: FilesSource):
assert_realizes_contains(file_sources, f"{ROOT_URI}/dir1/sub1/f", "f")


def test_list(temp_file_source: FilesSource):
def test_list(temp_file_source: TempFilesSource):
assert_list_names(temp_file_source, "/", recursive=False, expected_names=["a", "b", "c", "dir1"])
assert_list_names(temp_file_source, "/dir1", recursive=False, expected_names=["d", "e", "sub1"])


def test_list_recursive(temp_file_source: FilesSource):
def test_list_recursive(temp_file_source: TempFilesSource):
expected_names = ["a", "b", "c", "dir1", "d", "e", "sub1", "f"]
assert_list_names(temp_file_source, "/", recursive=True, expected_names=expected_names)


def test_pagination(temp_file_source: FilesSource):
def test_pagination(temp_file_source: TempFilesSource):
# Pagination is only supported for non-recursive listings.
recursive = False
root_lvl_entries = temp_file_source.list("/", recursive=recursive)
Expand Down Expand Up @@ -83,12 +85,8 @@ def test_pagination(temp_file_source: FilesSource):
assert result[2] == root_lvl_entries[3]


def _populate_test_scenario(file_source: FilesSource):
def _populate_test_scenario(file_source: TempFilesSource):
"""Create a directory structure in the file source."""
if os.path.exists(ROOT_PATH):
shutil.rmtree(ROOT_PATH)
os.mkdir(ROOT_PATH)

user_context = user_context_fixture()

_upload_to(file_source, "/a", content="a", user_context=user_context)
Expand All @@ -99,14 +97,24 @@ def _populate_test_scenario(file_source: FilesSource):
_upload_to(file_source, "/dir1/sub1/f", content="f", user_context=user_context)


def _upload_to(file_source: FilesSource, target_uri: str, content: str, user_context=None):
def _upload_to(file_source: TempFilesSource, target_uri: str, content: str, user_context=None):
with tempfile.NamedTemporaryFile(mode="w") as f:
f.write(content)
f.flush()
file_source.write_from(target_uri, f.name, user_context=user_context)


def assert_list_names(file_source: FilesSource, uri: str, recursive: bool, expected_names: List[str]):
def assert_list_names(file_source: TempFilesSource, uri: str, recursive: bool, expected_names: List[str]):
result = file_source.list(uri, recursive=recursive)
assert sorted([entry["name"] for entry in result]) == sorted(expected_names)
return result


def _configured_file_sources() -> TestConfiguredFileSources:
tmp, root = setup_root()
file_sources_config = FileSourcePluginsConfig()
plugin = TEMP_PLUGIN
plugin["root_path"] = root
file_sources = TestConfiguredFileSources(file_sources_config, conf_dict={TEMP_PLUGIN["id"]: plugin}, test_root=root)
_populate_test_scenario(file_sources.get_file_source_path(ROOT_URI).file_source)
return file_sources

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