galaxyproject · NickSto · Oct 27, 2021 · Oct 27, 2021
diff --git a/content/jxtx/cshl_jtech.png → content/images/jxtx/cshl_jtech.png b/content/jxtx/cshl_jtech.png → content/images/jxtx/cshl_jtech.png
diff --git a/content/jxtx/i-love-you-so-much.jpg → content/images/jxtx/i-love-you-so-much.jpg b/content/jxtx/i-love-you-so-much.jpg → content/images/jxtx/i-love-you-so-much.jpg
diff --git a/content/jxtx/james-and-alvey.png → content/images/jxtx/james-and-alvey.png b/content/jxtx/james-and-alvey.png → content/images/jxtx/james-and-alvey.png
diff --git a/content/jxtx/james-at-gcc2019-stripe.jpg → ...t/images/jxtx/james-at-gcc2019-stripe.jpg b/content/jxtx/james-at-gcc2019-stripe.jpg → ...t/images/jxtx/james-at-gcc2019-stripe.jpg
diff --git a/content/jxtx/james.jpg → content/images/jxtx/james.jpg b/content/jxtx/james.jpg → content/images/jxtx/james.jpg
diff --git a/content/jxtx/jtech-logo-with-text-500.png → .../images/jxtx/jtech-logo-with-text-500.png b/content/jxtx/jtech-logo-with-text-500.png → .../images/jxtx/jtech-logo-with-text-500.png
diff --git a/content/jxtx/jtech-shoes-400.png → content/images/jxtx/jtech-shoes-400.png b/content/jxtx/jtech-shoes-400.png → content/images/jxtx/jtech-shoes-400.png
diff --git a/content/jxtx/foundation/index.md b/content/jxtx/foundation/index.md
@@ -1,61 +1,5 @@
 ---
 title: 'JXTX: The James P. Taylor Foundation for Open Science'
+redirect: 'https://jxtxfoundation.org/'
 ---
 
-<div class="text-right">
-
-*The most important job of senior faculty is to mentor junior faculty and students. (@jxtx)*
-
-</div>
-
-<br />
-
-These are the words that James Taylor (JT) said and lived by. This, he believed, was imperative to advance science, and in a way that facilitated diversity and inclusion. The mission of this foundation is to continue his legacy, through a multifaceted approach which will be unrolled across several stages.
-
-## Recent Foundation Activity and News
-
-[<img class="float-right" src="/news/2020-10-jxtx-awardees/awardees-thumb.png" alt="JXTX Foundation Awards 10 Scholarships" style="max-width: 12rem" />](/news/2020-10-jxtx-awardees/)
-
-The JXTX Foundation's first activity is to sponsor 10 graduate students to attend the 2020 Biological Data Science Conference at Cold Spring Harbor Laboratory.  Awards were competitive and we are delighted with our first round of scholarships:
-
-* **[Sumaira Zaman: JXTX Foundation and Unique Opportunities](/news/2020-11-jxtx-zaman/)**, November 25, 2020
-* **[Anoushka Joglekar: Making Connections via the JXTX Foundation](/news/2020-11-jxtx-joglekar/)**, November 24, 2020
-* **[David Twesigomwe on the impact of the JXTX Foundation](/news/2020-11-jxtx-twesigomwe/)**, November 20, 2020
-* **[JXTX Foundation Awards First Ten Scholarships](/news/2020-10-jxtx-awardees/)**, October 23, 2020
-* **[Call for Scholarship Applications for Biological Data Science 2020](/news/2020-07-bds-scholarships/)**, July 8, 2020
-* **[The James Taylor Foundation](/news/2020-05-jtech/)**, May 7, 2020
-
-<br />
-
-<div class="text-center">
-<button type="button" class="btn btn-secondary" style="font-size: x-large; font-weight: 600;">
-
-[Donate now](https://give.communityfunded.com/o/eberly/i/eberly-college-of-science/s/jtech#CommunityI39hubL9i)</button>
-
-</div>
-
-<br />
-
-
-## About the JXTX Foundation
-
-<div class="float-left img-sizer" style="max-width: 10rem">
-
-![James Taylor Foundation: Big Shoes to Fill](/jxtx/jtech-shoes-400.png)
-
-<div class="small text-left">Big shoes to fill.
-
-Design by [Rebekka Paisner](https://twitter.com/rebekkapaisner)
-
-</div>
-</div>
-
-In its early stages, the JXTX Foundation will provide support for graduate students to attend conferences in computational biology and data science, where they can present their work and form connections with other researchers in the field. Towards the goal of advancing mentorship, JXTX will organize and host mentoring sessions between senior and junior faculty members at select high-profile meetings.
-
-The Foundation will later expand its reach as a platform for academic mentorship. First, it will operate to spark mentoring relationships among the larger computational biology and data science community. As part of membership, faculty and students will have an opportunity to participate in periodic mentorship meetings (virtually). We expect an enthusiastic response to this opportunity, and will recruit additional team members to provide organizational structure if necessary.
-
-In its later stages, the Foundation will sponsor in-person visits from students (high school or college age) to its hotspots, which currently include Johns Hopkins and Penn State. These visits are meant to attract new scholars to computational biology and data science, and in particular to form connections and opportunities for members of underrepresented minorities.
-
-**Please consider [contributing](https://give.communityfunded.com/o/eberly/i/eberly-college-of-science/s/jtech#CommunityI39hubL9i) to continue James Taylor's legacy.**
-
-
diff --git a/content/jxtx/index.md b/content/jxtx/index.md
@@ -1,98 +1,5 @@
 ---
 title: 'James Peter Taylor | 1979 - 2020'
+redirect: 'https://jxtxfoundation.org/'
 ---
 
-<div class="text-right">
-
-*Good ideas don’t have owners—they belong to everyone (@jxtx)*
-
-</div>
-
-<br />
-
----
-
-<div class="video-variable">
-<iframe width="560" height="315" src="https://www.youtube.com/embed/oGOF3r3SmDY" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
-</div>
-
-<p class="h1 text-center"> Happy Birthday James. </p>
-
-
----
-
-<br />
-
-<div class="float-right" style="max-width: 15rem;">
-
-![James Taylor](./james.jpg)
-
-</div> 
-
-*A note to James, a year after his passing.*
-
-James:
-
-What a year. It was difficult. It was the year in which Spotify AI was confused on how to make a playlist of a single song. And that song was Adagio in G minor. We questioned what is the way of going forward. But not for long. We realized that the only thing we can do is to continue. And so we did.
-
-First, the people. The team is the same. It is solid. It is through its dedication and energy we are where we are. People took this hard and some may never fully recover. Yet they knew how to handle this. And the outcome is evident. Still don't understand how so many great people agreed to work with us.
-
-Then, there is of course Galaxy. Despite all the pandemic ‘fun’, the GCC had the highest attendee count ever! The [COVID project](https://covid19.galaxyproject.org/) you were so fond of has unified the Galaxy community. There are very few remaining differences between usegalaxies. It is a truly community driven effort, just as you have always pictured it. That grant we were obsessing about last January is funded and we are again on solid footing for the foreseeable future. Your tweaking with LaTeX was definitely worth it.
-
-There is also [AnVIL](https://anvilproject.org/). Shaped by your vision from the start, it continued along the right trajectory thanks to [Mike](https://schatz-lab.org/)'s energy and technical excellence of your good old crew. It will work as you intended.
-
-[We used your sudden absence as an excuse to raise money](/jxtx/foundation/). Our goal was to fund a program that would make it possible for graduate students to attend key genomics meetings. The response was amazing! We tested this approach at CSHL Biological Data Science past year and funded [10 graduate students](https://galaxyproject.org/news/2020-10-jxtx-awardees/). We will be doing this regularly once life returns to post-COVID normal and meetings are again of the "in-person" kind.
-
-One last thing. Some of us know your birthday date despite your best effort to hide it. So from now on, we will be celebrating each May 18 as the JXTX/Galaxy day. This year the Galaxy community members will come together to produce short videos in which they describe their interactions with you or the impact you’ve had on them - we’ll then assemble the videos into a modern poster. I just wanted to warn you ahead of time as you may find videos about yourself a bit weird. 
-
-So, as you can see, we are trying … we’ll be keeping you in the loop. Just not on April 2. We think May 18 is better!
-
-
-**Have a memory of James to share?**
-
-Please share your favorite story about James in ~ 30 seconds. We will combine your clips into a community video that will be prominently featured on all Galaxy-related sites.
-
-Here is what we will need you to do **by May 7**:
-
-1. Think of your favorite story/interaction/event involving James.
-1. Pick a nice location and record the video!
-1. The video should be:
-    * in a high-resolution
-    * without background noise
-    * in a horizontal orientation (not vertical!)
-    * ≲ 30 seconds in length
-1. Deposit video file to your Google Drive or Dropbox folder (or any other location that would allow us to retrieve it)
-1. Send a link to the video, your name and location as you would like them to appear in the final video to: outreach@galaxyproject.org
-
-Thank you all in advance and please feel free to send this email to other friends of James.
-
-<br />
-
----
-
-**James Taylor, a leader of the Galaxy Project, and one of its original members, passed away on April 2, 2020.**  The community response has been tremendous, reflecting the breadth and depth of his impact.  Learn more about James and his impact:
-
-* [Biography](/jxtx/bio/)
-* [In memory of James Taylor: the birth of Galaxy](https://doi.org/10.1186/s13059-020-02016-0). Anton Nekrutenko & Michael C. Schatz. *Genome Biology* 21, 105 (2020)
-* [Stories](/jxtx/stories/)
-* [Memorials](/jxtx/memorials/)
-* [Community response](/jxtx/we-miss-you/)
-
-
-## JXTX: The James P. Taylor Foundation for Open Science
-
-**You can help continue James's legacy of open and reproducible science by contributing to [JXTX: The James P. Taylor Foundation for Open Science](/jxtx/foundation/).**
-
-
-<br />
-
-<div class="text-center">
-<button type="button" class="btn btn-secondary trim-p" style="font-size: x-large; font-weight: 600;">
-
-[Donate now](https://give.communityfunded.com/o/eberly/i/eberly-college-of-science/s/jtech#CommunityI39hubL9i)</button> &nbsp;&nbsp;&nbsp;&nbsp; <button type="button" class="btn btn-secondary" style="font-size: x-large; font-weight: 600;">
-[Learn more](/jxtx/foundation/)</button>
-
-</div>
-
-<br />
-
diff --git a/content/jxtx/memorials/index.md b/content/jxtx/memorials/index.md
@@ -10,7 +10,7 @@ title: 'James Peter Taylor | 1979 - 2020'
 
 ## Memorials to James from the web
 
-[<img class="float-right" src="/jxtx/james.jpg" alt="James Taylor" style="max-width: 15rem" />](/jxtx/james.jpg)
+[<img class="float-right" src="/images/jxtx/james.jpg" alt="James Taylor" style="max-width: 15rem" />](/images/jxtx/james.jpg)
 
 Here are some excerpts from the numerous memorials to James on the web.
 

diff --git a/content/jxtx/stories/index.md b/content/jxtx/stories/index.md
@@ -12,7 +12,7 @@ title: 'James Peter Taylor | 1979 - 2020'
 
 ---
 
-[<img class="float-right" src="/jxtx/james.jpg" alt="James Taylor" style="max-width: 15rem" />](/jxtx/james.jpg)
+[<img class="float-right" src="/images/jxtx/james.jpg" alt="James Taylor" style="max-width: 15rem" />](/images/jxtx/james.jpg)
 
 
 Stories about James from people who know him well.

diff --git a/content/jxtx/cool-shoes-1.jpg → content/jxtx/we-miss-you/cool-shoes-1.jpg b/content/jxtx/cool-shoes-1.jpg → content/jxtx/we-miss-you/cool-shoes-1.jpg
diff --git a/content/jxtx/cool-shoes-2.png → content/jxtx/we-miss-you/cool-shoes-2.png b/content/jxtx/cool-shoes-2.png → content/jxtx/we-miss-you/cool-shoes-2.png
diff --git a/content/jxtx/we-miss-you/index.md b/content/jxtx/we-miss-you/index.md
@@ -2,7 +2,7 @@
 title: 'James Peter Taylor | 1979 - 2020'
 ---
 
-<div class="text-right">
+<div class="text-right trim-p">
 
 *Good ideas don’t have owners—they belong to everyone (@jxtx)*
 
@@ -12,7 +12,11 @@ title: 'James Peter Taylor | 1979 - 2020'
 
 ---
 
-<img src="/jxtx/i-love-you-so-much.jpg" class="float-right figure-img img-fluid rounded" style="max-width: 30rem;" alt="We miss you James.">
+<div class="img-sizer float-right figure-img img-fluid rounded" style="max-width: 30rem">
+
+![We miss you James.](/images/jxtx/i-love-you-so-much.jpg)
+
+</div>
 
 ## Community
 
@@ -87,7 +91,11 @@ I am utterly shocked and terribly saddened to hear this. James has been a wonder
 <footer class="blockquote-footer">Steven Salzberg, Johns Hopkins</footer>
 </blockquote>
 
-[<img src="/jxtx/james-and-alvey.png" alt="James and Alvey" class="float-right" style="max-width: 10rem;" />](/jxtx/james-and-alvey.png)
+<div class="img-sizer float-right" style="max-width: 10rem">
+
+[![James and Alvey](/images/jxtx/james-and-alvey.png)](/images/jxtx/james-and-alvey.png)
+
+</div>
 
 <blockquote class="blockquote">
 Our hearts are heavy.  James Taylor has passed away.
@@ -340,9 +348,9 @@ This makes no sense. So incredibly sad to hear this. My heart goes out to all wh
 
 <div class="float-right img-sizer" style="max-width: 10rem;">
 
-[![Sarah's James-inspired shoes](/jxtx/cool-shoes-1.jpg)](/jxtx/cool-shoes-1.jpg)
+[![Sarah's James-inspired shoes](./cool-shoes-1.jpg)](/jxtx/we-miss-you/cool-shoes-1.jpg)
 
-[![James' shoes, an example](/jxtx/cool-shoes-2.png)](/jxtx/cool-shoes-2.png)
+[![James' shoes, an example](./cool-shoes-2.png)](/jxtx/we-miss-you/cool-shoes-2.png)
 
 </div>
 
@@ -661,7 +669,11 @@ I am so saddened to hear this.  I felt a bond with James over his commitment to
 <footer class="blockquote-footer">Cricket Sloan, UCSC</footer>
 </blockquote>
 
-[<img src="/jxtx/james-at-apachecon.jpg" alt="James at ApacheCon, with Kurt Schrader" class="float-right" style="max-width: 10rem;" />](/jxtx/james-at-apachecon.jpg)
+<div class="img-sizer float-right" style="max-width: 10rem">
+
+[![James at ApacheCon, with Kurt Schrader](./james-at-apachecon.jpg)](/jxtx/we-miss-you/james-at-apachecon.jpg)
+
+</div>
 
 <blockquote class="blockquote">
 I met James in November 2002 at an open-source software conference. He was working professionally as a software developer and was speaking of his desire to go back to school to study bioinformatics. I’ve watched his career from afar as he’s done amazing work. I know he will be missed. 

diff --git a/content/jxtx/james-at-apachecon.jpg → ...t/jxtx/we-miss-you/james-at-apachecon.jpg b/content/jxtx/james-at-apachecon.jpg → ...t/jxtx/we-miss-you/james-at-apachecon.jpg
@@ -5,7 +5,7 @@ external_url: ""
 date: "2020-04-03"
 ---
 
-[<img class="float-right" src="/jxtx/james.jpg" alt="James Taylor" style="max-width: 20rem" />](/jxtx/)
+[<img class="float-right" src="/images/jxtx/james.jpg" alt="James Taylor" style="max-width: 20rem" />](/jxtx/)
 
 <p class="lead">
 We just lost James Taylor (1979-2020). His legacy — open, reproducible science — will continue.

@@ -8,7 +8,7 @@ date: "2020-05-04"
 
 # From the editor
 
-[<img class="float-right" src="/jxtx/i-love-you-so-much.jpg" alt="I love you so much"  style="max-width: 30rem;" />](/jxtx/i-love-you-so-much.jpg)
+[<img class="float-right" src="/images/jxtx/i-love-you-so-much.jpg" alt="I love you so much"  style="max-width: 30rem;" />](/images/jxtx/i-love-you-so-much.jpg)
 
 This is our first newsletter since January. It has been an eventful and sorrowful four months for the world, and for the Galaxy Community too: *This newsletter starts with the [tragic loss of James Taylor](#james-peter-taylor-1979-2020), one of Galaxy's founders and leaders.*  We lost James at the beginning of April. This community, I suspect, will always feel that loss.
 
@@ -44,7 +44,7 @@ If you have anything to include to next month's newsletter, then please send it
 
 # James Peter Taylor, 1979-2020
 
-[<img class="float-right" src="/jxtx/james-and-alvey.png" alt="James and Alvey"  style="max-width: 15rem;" />](/jxtx/)
+[<img class="float-right" src="/images/jxtx/james-and-alvey.png" alt="James and Alvey"  style="max-width: 15rem;" />](/jxtx/)
 
 James Taylor, one of the founders and leaders of the Galaxy Project died of natural causes on April 2.  One day he was online tweeting about open access to data, and the next day he was not.  News of his passing spread around the world, and the response has been overwhelming.
 

@@ -7,7 +7,7 @@ date: "2020-05-07"
 
 <div class="float-right" style="max-width: 10rem">
 
-![James Taylor Foundation: Big Shoes to Fill](/jxtx/jtech-shoes-400.png)
+![James Taylor Foundation: Big Shoes to Fill](/images/jxtx/jtech-shoes-400.png)
 
 <div class="small float-right">
 

@@ -26,7 +26,7 @@ If you have anything to include to next month's newsletter, then please send it
 # JTech, the James Taylor Foundation
 
 <div class="float-right">
-<img  src="/jxtx/jtech-shoes-400.png" alt="James Taylor Foundation: Big Shoes to Fill" style="max-width: 10rem" /><br />
+<img  src="/images/jxtx/jtech-shoes-400.png" alt="James Taylor Foundation: Big Shoes to Fill" style="max-width: 10rem" /><br />
 <div class="small float-right">Design by [Rebekka Paisner](https://twitter.com/rebekkapaisner)</div>
 </div>
 

@@ -5,7 +5,7 @@ external_url: ""
 date: "2020-07-08"
 ---
 
-<img src="/jxtx/cshl_jtech.png" class="float-right figure-img img-fluid rounded" style="max-width: 20rem;" alt="JTech 2020 Scholarship: CSHL Biological Data Science">
+<img src="/images/jxtx/cshl_jtech.png" class="float-right figure-img img-fluid rounded" style="max-width: 20rem;" alt="JTech 2020 Scholarship: CSHL Biological Data Science">
 
 The [JTech Foundation](https://give.communityfunded.com/o/eberly/i/eberly-college-of-science/s/jtech#CommunityI39hubL9) and [Cold Spring Harbor Laboratory](https://www.cshl.edu/) announce the **JTech 2020 Scholarship.** JTech and CSHL will provide support to 10 outstanding graduate students in genomics and data sciences to attend the [2020 CSHL Biological Data Science Conference](https://meetings.cshl.edu/meetings.aspx?meet=DATA&year=20). Applications are due August 1, 2020 ([Midnight EST](https://www.timeanddate.com/worldclock/fixedtime.html?msg=CSHL+JTech+Deadline&iso=20200801T00&p1=3705)).
 

@@ -8,7 +8,7 @@ redirect: "/news/2020-10-jxtx-awardees/"
 
 We are pleased to announce the first group of scholarship awardees for the [James Taylor Foundation's Junior Training and Educational Hotspot (JTech)](https://give.communityfunded.com/o/eberly/i/eberly-college-of-science/s/jtech#CommunityI39hubL9i) program.  JTech supports graduate students, post-docs and junior faculty working at the intersection of computational biology and data science.  The first group of 10 awardees are graduate students presenting their work at the [2020 CSHL Biological Data Science](https://meetings.cshl.edu/meetings.aspx?meet=data&year=20) conference.  Awardees represent ten institutions and are presenting a wide range of research at the meeting:
 
-[<img class="float-right" style="max-width: 14rem" src="/jxtx/jtech-logo-with-text-500.png" alt="JTech" />](https://give.communityfunded.com/o/eberly/i/eberly-college-of-science/s/jtech#CommunityI39hubL9i)
+[<img class="float-right" style="max-width: 14rem" src="/images/jxtx/jtech-logo-with-text-500.png" alt="JTech" />](https://give.communityfunded.com/o/eberly/i/eberly-college-of-science/s/jtech#CommunityI39hubL9i)
 
 * **Emily Davis-Marcisak**, Johns Hopkins University
   * *Matrix factorization of single-cell RNA-sequencing identifies immune cell states that project across species, cancer type, and infectious disease*

@@ -30,7 +30,7 @@ Despite COVID-19, there is still a lot going on.  Some of it is virtual, but liv
 
 <!-- JTech -->
 <div class="card border-info" style="min-width: 14rem; max-width: 20rem">
-<img class="card-img-top" src="/jxtx/cshl_jtech.png" alt="JTech Scholarships" />
+<img class="card-img-top" src="/images/jxtx/cshl_jtech.png" alt="JTech Scholarships" />
 <div class="card-header">[First JTech Scholarships Awarded](/news/2020-09-jtech-scholarships/)</div>
 
 The [first group of scholarships have been awarded](/news/2020-09-jtech-scholarships/) by the [James Taylor Foundation's Junior Training and Educational Hotspot (JTech)](https://give.communityfunded.com/o/eberly/i/eberly-college-of-science/s/jtech#CommunityI39hubL9i) to attend [Biological Data Science](https://meetings.cshl.edu/meetings.aspx?meet=data&year=20).

@@ -30,7 +30,7 @@ If you have anything to include to next month's newsletter, then please send it
 <div class="card border-info" style="min-width: 13rem; max-width: 15rem">
 <div class="trim-p">
 
-![James Taylor](/jxtx/james.jpg)
+![James Taylor](/images/jxtx/james.jpg)
 
 </div>
 <div class="card-header">Same mission, new name</div>
@@ -58,7 +58,7 @@ The JXTX Foundation's first activity is to sponsor 10 graduate students to atten
 <div class="card border-info" style="min-width: 15rem; max-width: 17rem">
 <div class="trim-p">
 
-![Big shoes to fill](/jxtx/jtech-shoes-400.png)
+![Big shoes to fill](/images/jxtx/jtech-shoes-400.png)
 
 </div>
 <div class="card-header">Help move Open Science forward</div>

@@ -59,7 +59,7 @@ Thank you all in advance and please feel free to invite other friends of James t
 
 <!-- James -->
 <div class="card border-info" style="min-width: 10rem; max-width: 100%">
-<img class="card-img-top" src="/jxtx/james-at-gcc2019-stripe.jpg" alt="James Taylor" />
+<img class="card-img-top" src="/images/jxtx/james-at-gcc2019-stripe.jpg" alt="James Taylor" />
 <div class="card-header">
 
 [A note to James, one year after his passing](/jxtx/)

@@ -5,7 +5,7 @@ external_url: ""
 date: "2021-04-02"
 ---
 
-<a href="/jxtx/"><img src="/jxtx/i-love-you-so-much.jpg" alt="A good James story" class="float-right" style="max-width: 24rem" /></a>
+<a href="/jxtx/"><img src="/images/jxtx/i-love-you-so-much.jpg" alt="A good James story" class="float-right" style="max-width: 24rem" /></a>
 
 <p class="lead">