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feature: support single batch gtdbtk classification #130

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@franciscozorrilla franciscozorrilla commented Jun 9, 2023

馃┗ Single batch submission of GTDBTk-based taxonomic classification 馃殌

Current GTDBTk rule is great when dealing with many metagenomes, but when dealing with many isolate samples it makes more sense to follow this subworkflow task.

馃悕 Snakefile tasks

  • create GTDBTk_singlerun for single job submission of small number of genomes

馃敤 Additional modifications for full integration/support

  • metaGEM.sh: add options + support for new tasks, helpfile message
  • main readme: update helpfile message

# 馃┗ Single batch submission of GTDBTk-based taxonomic classification 馃殌

## 馃悕 Snakefile tasks

- [x] create GTDBTk_singlerun for single job submission of small number of genomes

## 馃敤 Additional modifications for full integration/support

- [ ] metaGEM.sh: add options + support for new tasks
- [ ] config.yaml: add params used in new tasks
- [ ] config readme file
- [ ] main readme file: text
@franciscozorrilla franciscozorrilla self-assigned this Jun 9, 2023
@franciscozorrilla franciscozorrilla added the enhancement New feature or request label Jun 9, 2023
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