Skip to content
/ qsub Public

This repository contains a subset of the FieldTrip code related to distributed computing

License

Notifications You must be signed in to change notification settings

fieldtrip/qsub

Repository files navigation

This is the FieldTrip QSUB toolbox. It facilitates distributed computing on
a Linux cluster without requiring the MATLAB parallel toolbox or distributed
computing engines. It only requires a standard MATLAB installation on the
cluster nodes. Alternatively, it can use the MATLAB compiler to run on clusters
where MATLAB is not available or where the number of licenses is limited.

Using the FieldTrip QSUB toolbox requires that you have MATLAB on a computer
from which you can directly (from the Linux command line) submit jobs, and a
shared file system between the submit host and the compute nodes.

The goal of this toolbox is to provide you with an easy MATLAB interface to
distribute your jobs that is compatible with the MATLAB batch, feval and
cellfun functions. It offers a simple MATLAB interface to distribute your jobs
and you do not have to go to the Linux command-line to use the qsub command
from there.  The toolbox supports Linux clusters with Torque and other PBS
versions, Sun Grid Engine (SGE), Oracle Grid Engine and with SLURM as the
batch queueing system.

This toolbox has been developed as part of the FieldTrip toolbox, but can be
used separately. See http://www.fieldtriptoolbox.org for general details on the
FieldTrip project, http://www.fieldtriptoolbox.org/development/qsub for specific
details on the qsub toolbox or see http://www.fieldtriptoolbox.org/faq.

-------------------------------------------------------------------------------
Copyright (C) 2011-2019, Robert Oostenveld

This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program.  If not, see <http://www.gnu.org/licenses/
-------------------------------------------------------------------------------

About

This repository contains a subset of the FieldTrip code related to distributed computing

Topics

Resources

License

Stars

Watchers

Forks

Languages