Pinned

1. deep-learning-long-read-sequencing deep-learning-long-read-sequencing Public

   variant calling followed by deep learning modeling (MLP, CNN, RNN, LSTM) of sequencing artifacts in Oxford Nanopore Technologies (ONT) WGS data

   Jupyter Notebook

2. RNA-seq RNA-seq Public

   Nextflow pipeline for Salmon quantification of HSC bulk RNA-seq data followed by R/Bioconductor analysis

   Jupyter Notebook

3. scRNA-seq scRNA-seq Public

   Seurat R/Bioconductor scRNA-seq analysis of non-small-cell lung cancer (NSCLC) cells compared to normal lung cells

   Jupyter Notebook

4. scATAC-seq scATAC-seq Public

   Signac R/Bioconductor scATAC-seq analysis comparing chromatin accessibility in hematopoietic stem cells (HSCs) of young vs aged mice

   Jupyter Notebook

5. exome-sequencing exome-sequencing Public

   SLURM bash pipeline/workflow for downloading and analyzing exome sequencing NGS data from the SRA database on HPC cluster

   Shell

6. whole-genome-sequencing-cloud whole-genome-sequencing-cloud Public

   WDL/Cromwell GATK WGS workflow running on Google Cloud Platform (GCP) preemptible spot instances using Docker containers

   WDL