Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Non-NCBI TaxIDs -- Mapping to NCBI? #154

Open
valiantseal opened this issue Nov 29, 2023 · 0 comments
Open

Non-NCBI TaxIDs -- Mapping to NCBI? #154

valiantseal opened this issue Nov 29, 2023 · 0 comments

Comments

@valiantseal
Copy link

valiantseal commented Nov 29, 2023

Hello,

I saw in the documentation that there are non-NCBI taxonomic IDs sourced from BioProject. I'm wondering if anyone has been able to map these to NCBI taxonomic IDs (on the species-level) or if there's a part of the database which I can use. I've been using Kraken for a metagenomics project and have been struggling to use Kraken since it oftentimes has only family-level NCBI taxonomic IDs and above, but will provide non-NCBI species-level IDs.

Thanks!!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant