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.sh: 1: dustmasker: not found #141

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BhawnaY16 opened this issue Apr 27, 2023 · 1 comment
Open

.sh: 1: dustmasker: not found #141

BhawnaY16 opened this issue Apr 27, 2023 · 1 comment

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@BhawnaY16
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I ran the command krakenuniq-download --db DBDIR --dust microbial-nt and I am getting this error
Writing DBDIR/library/nt-archaea.fna ... Done, wrote 374875 sequences for 14411 taxa (took 36s).
DBDIR/library/nt-archaea.fna check [2.07 GB]
Masking low-complexity sequences [dustmasker -infmt fasta -in DBDIR/library/nt-archaea.fna -level 20 -outfmt fasta | sed '/^>/! s/[^AGCT]/N/g' > DBDIR/library/nt-archaea-dustmasked.fna.tmp && mv DBDIR/library/nt-archaea-dustmasked.fna.tmp DBDIR/library/nt-archaea-dustmasked.fna] ...sh: 1: dustmasker: not found
It would be appreciated if someone can help me with this.

@sjaenick
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You need to install Blast+.

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