deploy: af776fa

etetoolkit · Feb 21, 2024 · 1baaa97 · 1baaa97
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diff --git a/_modules/ete4/smartview/gui/server.html b/_modules/ete4/smartview/gui/server.html
@@ -551,11 +551,6 @@ <h1>Source code for ete4.smartview.gui.server</h1><div class="highlight"><pre>
     <span class="n">response</span><span class="o">.</span><span class="n">status</span> <span class="o">=</span> <span class="mi">201</span>
     <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;message&#39;</span><span class="p">:</span> <span class="s1">&#39;ok&#39;</span><span class="p">,</span> <span class="s1">&#39;ids&#39;</span><span class="p">:</span> <span class="n">ids</span><span class="p">}</span>
 
-<span class="nd">@put</span><span class="p">(</span><span class="s1">&#39;/trees/&lt;tree_id&gt;&#39;</span><span class="p">)</span>
-<span class="k">def</span> <span class="nf">callback</span><span class="p">(</span><span class="n">tree_id</span><span class="p">):</span>
-    <span class="n">modify_tree_fields</span><span class="p">(</span><span class="n">tree_id</span><span class="p">)</span>
-    <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;message&#39;</span><span class="p">:</span> <span class="s1">&#39;ok&#39;</span><span class="p">}</span>
-
 <span class="nd">@put</span><span class="p">(</span><span class="s1">&#39;/trees/&lt;tree_id&gt;/sort&#39;</span><span class="p">)</span>
 <span class="k">def</span> <span class="nf">callback</span><span class="p">(</span><span class="n">tree_id</span><span class="p">):</span>
     <span class="n">node_id</span><span class="p">,</span> <span class="n">key_text</span><span class="p">,</span> <span class="n">reverse</span> <span class="o">=</span> <span class="n">req_json</span><span class="p">()</span>
@@ -1647,20 +1642,6 @@ <h1>Source code for ete4.smartview.gui.server</h1><div class="highlight"><pre>
 
 
 
-<div class="viewcode-block" id="modify_tree_fields">
-<a class="viewcode-back" href="../../../../reference/reference_smartview.html#ete4.smartview.gui.server.modify_tree_fields">[docs]</a>
-<span class="k">def</span> <span class="nf">modify_tree_fields</span><span class="p">(</span><span class="n">tree_id</span><span class="p">):</span>
-    <span class="s2">&quot;Modify in the database the tree fields that appear in a request&quot;</span>
-    <span class="n">tid</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">tree_id</span><span class="p">)</span>
-
-    <span class="n">data</span> <span class="o">=</span> <span class="n">get_fields</span><span class="p">(</span><span class="n">valid_extra</span><span class="o">=</span><span class="p">[</span>
-        <span class="s1">&#39;name&#39;</span><span class="p">,</span> <span class="s1">&#39;description&#39;</span><span class="p">,</span> <span class="s1">&#39;newick&#39;</span><span class="p">])</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">data</span><span class="p">:</span>
-        <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;message&#39;</span><span class="p">:</span> <span class="s1">&#39;ok&#39;</span><span class="p">}</span></div>
-
-
-
 <div class="viewcode-block" id="update_app_available_layouts">
 <a class="viewcode-back" href="../../../../reference/reference_smartview.html#ete4.smartview.gui.server.update_app_available_layouts">[docs]</a>
 <span class="k">def</span> <span class="nf">update_app_available_layouts</span><span class="p">():</span>
@@ -1768,23 +1749,6 @@ <h1>Source code for ete4.smartview.gui.server</h1><div class="highlight"><pre>
 
 
 
-<div class="viewcode-block" id="get_fields">
-<a class="viewcode-back" href="../../../../reference/reference_smartview.html#ete4.smartview.gui.server.get_fields">[docs]</a>
-<span class="k">def</span> <span class="nf">get_fields</span><span class="p">(</span><span class="n">required</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">valid_extra</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="s2">&quot;Return fields and raise exception if missing required or invalid present&quot;</span>
-    <span class="n">data</span> <span class="o">=</span> <span class="n">req_json</span><span class="p">()</span>
-
-    <span class="k">if</span> <span class="n">required</span> <span class="ow">and</span> <span class="nb">any</span><span class="p">(</span><span class="n">x</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">data</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">required</span><span class="p">):</span>
-        <span class="n">abort</span><span class="p">(</span><span class="mi">400</span><span class="p">,</span> <span class="sa">f</span><span class="s1">&#39;must have the fields </span><span class="si">{</span><span class="n">required</span><span class="si">}</span><span class="s1">&#39;</span><span class="p">)</span>
-
-    <span class="n">valid</span> <span class="o">=</span> <span class="p">(</span><span class="n">required</span> <span class="ow">or</span> <span class="p">[])</span> <span class="o">+</span> <span class="p">(</span><span class="n">valid_extra</span> <span class="ow">or</span> <span class="p">[])</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">(</span><span class="n">x</span> <span class="ow">in</span> <span class="n">valid</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">data</span><span class="p">):</span>
-        <span class="n">abort</span><span class="p">(</span><span class="mi">400</span><span class="p">,</span> <span class="sa">f</span><span class="s1">&#39;can only have the fields </span><span class="si">{</span><span class="n">valid</span><span class="si">}</span><span class="s1">&#39;</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">data</span></div>
-
-
-
 <div class="viewcode-block" id="copy_style">
 <a class="viewcode-back" href="../../../../reference/reference_smartview.html#ete4.smartview.gui.server.copy_style">[docs]</a>
 <span class="k">def</span> <span class="nf">copy_style</span><span class="p">(</span><span class="n">tree_style</span><span class="p">):</span>

diff --git a/genindex.html b/genindex.html
@@ -905,8 +905,6 @@ <h2 id="G">G</h2>
       <li><a href="reference/reference_phylo.html#ete4.PhyloTree.get_farthest_oldest_leaf">get_farthest_oldest_leaf() (PhyloTree method)</a>
 </li>
       <li><a href="reference/reference_phylo.html#ete4.PhyloTree.get_farthest_oldest_node">get_farthest_oldest_node() (PhyloTree method)</a>
-</li>
-      <li><a href="reference/reference_smartview.html#ete4.smartview.gui.server.get_fields">get_fields() (in module ete4.smartview.gui.server)</a>
 </li>
       <li><a href="reference/reference_taxonomy.html#ete4.NCBITaxa.get_fuzzy_name_translation">get_fuzzy_name_translation() (NCBITaxa method)</a>
 </li>
@@ -1309,8 +1307,6 @@ <h2 id="M">M</h2>
       <li><a href="reference/reference_operations.html#ete4.core.operations.midpoint">midpoint() (in module ete4.core.operations)</a>
 </li>
       <li><a href="reference/reference_smartview.html#ete4.smartview.renderer.drawer.Drawer.MIN_SIZE">MIN_SIZE (Drawer attribute)</a>
-</li>
-      <li><a href="reference/reference_smartview.html#ete4.smartview.gui.server.modify_tree_fields">modify_tree_fields() (in module ete4.smartview.gui.server)</a>
 </li>
       <li>
     module

diff --git a/objects.inv b/objects.inv