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@UPHL-BioNGS
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erinyoung/README.md

Greetings!

I work at the Utah Public Health Laboratory as a Bioinformatician.

I mostly work in the linux (centos and ubuntu) command line (shell).

I have written a few packages in python, but mostly I cobble bioinformatic tools together into nextflow workflows.

I'd like to learn rust, but haven't found the time.

I'm almost always open for collaboration.

Pinned

  1. StaPH-B/docker-builds StaPH-B/docker-builds Public

    📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics

    Dockerfile 170 115

  2. roundabout roundabout Public

    Finding regions of similarity between plasmids

    Nextflow 14

  3. UPHL-BioNGS/Cecret UPHL-BioNGS/Cecret Public

    Reference-based consensus creation

    Nextflow 41 22

  4. UPHL-BioNGS/Grandeur UPHL-BioNGS/Grandeur Public

    UPHL's Reference Free Pipeline

    Nextflow 22 6

  5. UPHL-BioNGS/Donut_Falls UPHL-BioNGS/Donut_Falls Public

    Basic workflow for nanopore sequencing data

    Nextflow 14 1

  6. ACI ACI Public

    Some NGS library preps use amplicons, and it can be difficult to determine the coverage and depth of each amplicon.

    Python 2