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@eMetaboHUB

French national infrastructure in metabolomics & fluxomics

Public repository for metabolomics & fluxomics tools by METABOHUB
readme.md

Welcome to our public repository for metabolomics & fluxomics tools by MetaboHUB

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Please find all our public codes, projects and best practices from the MetaboHUB national infrastructure.

Public code repositories

  • Discovery - eases sparql request
  • Forum - DiseasesChem - a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.
  • MetExplore/Met4J - an open-source Java library dedicated to the structural analysis of metabolic networks.
  • Metasaurus - ontology for metabolomics studies and objects
  • PeakForest - The MetaboHUB's spectral database
  • MAMA - The Metabolomics Analysis MAnager project

Documentation and best practices

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Popular repositories

  1. MS-CleanR MS-CleanR Public archive

    R 25 7

  2. Forum-DiseasesChem Forum-DiseasesChem Public

    A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.

    Python 14 6

  3. FragHub FragHub Public

    Python 4

  4. Forum-LiteraturePropagation Forum-LiteraturePropagation Public

    Python 2

  5. metabolomics2network-discovery metabolomics2network-discovery Public

    ScalaJs implementation based of "Improving lipid mapping in Genome Scale Metabolic Networks using ontologies."

    Scala 1

  6. SBML2RDF SBML2RDF Public

    Java 1

Repositories

Showing 9 of 9 repositories

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