equine_synovialFluid_scRNA

This GitHub repository contains all the analysis code used in, "Characterization of single cell transcriptomic responses to osteoarthritis in a naturally occurring equine model."

The manuscript is currently under review and the GitHub page will be finalized by the time of publication.

A pre-print will be avaliable shortly.

Repository goals:

• provide a resource to make the data generated from this project accessible
• enable reproducible/transparent data reporting
• provide analysis code to reproduce custom figures

If you have any questions or concerns, please submit an issue, contact the corresponding author(s), and/or contact Dylan Ammons at dylan.ammons @ colostate dot edu.

File structure:

• 📁 input instructions for obtaining data associated with this study
• 📁 scripts contains the analysis code and source file used to complete the data analysis

Supplemental data and potential uses:

1. Browse the data
2. Cell type annotations
3. Reference Mapping
4. GSEA using dataset
5. Module scoring
6. CIBERSORTx