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Scripts for extraction and analysis of widefield calcium data from awake behaving mice.

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drchristianlee/GC6-wf

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FaceMap integration

FaceMap integration

 
 

FaceMap-master

FaceMap-master

 
 

plot signal and whisking

plot signal and whisking

 
 

roi based movement detection

roi based movement detection

 
 

.gitattributes

.gitattributes

 
 

GC6_roi_cross_covariance.m

GC6_roi_cross_covariance.m

 
 

GC6f_workflow.txt

GC6f_workflow.txt

 
 

GetRoiTimeseries.m

GetRoiTimeseries.m

 
 

README.md

README.md

 
 

SortCellByColumn.m

SortCellByColumn.m

 
 

ij_roiDecoder.m

ij_roiDecoder.m

 
 

import_WF_GCaMP6f.m

import_WF_GCaMP6f.m

 
 

import_WF_thy1GC6s.m

import_WF_thy1GC6s.m

 
 

imreadalltiff.m

imreadalltiff.m

 
 

whisker_concat.m

whisker_concat.m

 
 

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GC6-wf

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Scripts for extraction and analysis of widefield calcium data from awake behaving mice.

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behavior calcium-imaging imaging calcium

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