CSBFinder-S v0.6.3

• Bug fixes
• Add an option to display a CSB of length 1 (however, the algorithm supports searching for CSBs of length 2 and up)
• Add an option to import a genome metadata file

CSBFinder-S v0.6.2

• Added a filtration feature
• Bug fixes:
  • Some rare instance were not found in single-strand mode
  • Fixed score computation for very large datasets
  • Fixed some circular genome views

CSBFinder-S v0.6.1

• Added feature: search CSBs in circular genomes
• Minor bug fixes

CSBFinder-S v0.6.0

• CSB score can now be affected by genomic distances
• Added extraction using predefined patterns

UI impovements:

• Zoom-in and zoom-out
• Improved filtration options
• Taxonomy view for CSB instances
• Add clustering and ranking as post-processing
• Alignment of genes by double click
• Configuration file for loading files automatically
• Save and save as options
• Gene colors are saved in a session file

CSBFinder-S v0.5.1

Minor changes

• Remove installer automatic launch on startup option
• Remove unused options in the algorithms

CSBFinder-S v0.5.0

CSBFinder-S - for cross-strand CSB discovery

An option for the discovery of CSBs that spread over two strands
A "match-point algorithm" that consumes less memory, and is more efficient for larger values of insertions
A multi-threaded mode for the "match-point algorithm"
Filtration options for the CSBs in the user interface
Memory improvement

CSBFinder v0.3.2

Minor changes since the last version

CSBFinder v0.3.1

In this version, the input parameters were split to basic and to advanced parameters in the UI.

CSBFinder v0.3.0

Added a graphical user interface, but can be executed via command line as well

CSBFinder v0.2.1

• Bug fix: start index of an instance on the reverse strand was incorrect