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51 Open 485 Closed
51 Open 485 Closed
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Issues list

analysis.treemix - toytree v3.0 compatibility
#559 opened Apr 29, 2024 by isaacovercast
No PE fastq pairs detected based on filenames, assuming SE data
#557 opened Apr 26, 2024 by angelicagallegonar
2
problems downloading Pedicularis example data
#552 opened Mar 22, 2024 by jesus-mavarez
1
ipyrad error step 6: ValueError: cannot copy sequence with size 298 to array axis with dimension 299
#551 opened Mar 20, 2024 by IvonedeBem
4
*.ustr file and other files not generated when using a genome as a reference in the assembly method
#542 opened Jan 28, 2024 by aroavaron
6
In Step 7: Message: ValueError: not enough values to unpack (expected 2, got 1)
#541 opened Jan 27, 2024 by aroavaron
5
ipyrad rtfd 'latest' doesn't point to current docs
#524 opened Aug 28, 2023 by isaacovercast
ipa.sratools - Broken
#523 opened Aug 28, 2023 by isaacovercast
Step 3: refminus for SE data
#521 opened Aug 17, 2023 by isaacovercast
analysis tools - CLUMPP on M1
#511 opened Jun 1, 2023 by isaacovercast
ipyrad (reference version, pairddrad) step 7 crash -- Message: KeyError: 68
#508 opened May 21, 2023 by imaa9
2
Installing ipyrad on mac M2
#499 opened Feb 17, 2023 by isaacovercast
2
AttributeError: module 'numpy' has no attribute 'asscalar'
#498 opened Feb 8, 2023 by LalitaSimpson
10
Popgen error AttributeError: 'str' object has no attribute 'decode'
#492 opened Aug 27, 2022 by mydjc
5
--ipcluster should not shut down the cluster
#488 opened Aug 3, 2022 by isaacovercast
write_outfiles - Add PopData column to structure output
#483 opened Jun 18, 2022 by isaacovercast
ipa.sratools - Replace 'fastq-dump' with 'fasterq-dump'
#482 opened Jun 15, 2022 by isaacovercast
Recover all sites (invariant sites) in vcf
#479 opened Mar 15, 2022 by biolevol
6
Chloroplast DNA problems
#476 opened Feb 9, 2022 by c-mccarron
4
Feature Request: Restarting Partway Through a Step
#468 opened Jan 4, 2022 by alexkrohn
5
Object 'quartets' does not exist
#462 opened Sep 20, 2021 by alexkrohn
4
ignore Ns for uSNP selection
#454 opened Aug 14, 2021 by cdoorenweerd
4
overlapping loci and duplicated SNPs
#442 opened Apr 9, 2021 by pdpapper
4
Step 3 gets to 85% and crashes.
#437 opened Feb 14, 2021 by Pgjhmb
9
Could output files reflect polyploidy?
#434 opened Feb 1, 2021 by ThrsBT
2
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