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Made changes to image transformer. #3975

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aaronrockmenezes
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Description

Current Image Transform uses a scipy method that has been dropped and is no longer functional.
I've added the ImageTransformer method to allow Resizing of images within ImageDatasets (or NumpyDatasets).
Both input data (X) and labels (y) can be transformed.
Uses only Pillow.

Type of change

Please check the option that is related to your PR.

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Breaking change (fix or feature that would cause existing functionality to not work as expected)
    • In this case, we recommend to discuss your modification on GitHub issues before creating the PR
  • Documentations (modification for documents)

Checklist

  • My code follows the style guidelines of this project
    • Run yapf -i <modified file> and check no errors (yapf version must be 0.32.0)
    • Run mypy -p deepchem and check no errors
    • Run flake8 <modified file> --count and check no errors
    • Run python -m doctest <modified file> and check no errors
  • I have performed a self-review of my own code
  • I have commented my code, particularly in hard-to-understand areas
  • I have made corresponding changes to the documentation
  • I have added tests that prove my fix is effective or that my feature works
  • New unit tests pass locally with my changes
  • I have checked my code and corrected any misspellings

images = [Image.fromarray(x).resize(self.size) for x in images]
return np.array(images), y, w

if self.transform_X:
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@aaronrockmenezes Can you add a unit test for the new functionality?

@@ -1943,25 +1943,36 @@ def UG_to_DAG(self, sample: ConvMol) -> List:


class ImageTransformer(Transformer):
"""Convert an image into width, height, channel
"""
Transforms images to a specified size.

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Can you add a usage example here?

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Also, can you expand the docstring to be more informative?

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LGTM once docs added and mypy issue resolved

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2 participants