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DFT PR - 7 #3974

Merged
merged 6 commits into from
Jun 3, 2024
Merged

DFT PR - 7 #3974

merged 6 commits into from
Jun 3, 2024

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GreatRSingh
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Description

Fix #(issue)

Type of change

Please check the option that is related to your PR.

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Breaking change (fix or feature that would cause existing functionality to not work as expected)
    • In this case, we recommend to discuss your modification on GitHub issues before creating the PR
  • Documentations (modification for documents)

Checklist

  • My code follows the style guidelines of this project
    • Run yapf -i <modified file> and check no errors (yapf version must be 0.32.0)
    • Run mypy -p deepchem and check no errors
    • Run flake8 <modified file> --count and check no errors
    • Run python -m doctest <modified file> and check no errors
  • I have performed a self-review of my own code
  • I have commented my code, particularly in hard-to-understand areas
  • I have made corresponding changes to the documentation
  • I have added tests that prove my fix is effective or that my feature works
  • New unit tests pass locally with my changes
  • I have checked my code and corrected any misspellings

@shreyasvinaya
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@GreatRSingh there seems to be some installation failure on windows, could you please resolve it

@@ -27,3 +27,4 @@ dependencies:
- xgboost
- gensim # used by mol2vec
- tensorboard
- basis-set-exchange
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This should not be a required dependency for anyone

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I was removing it but saw that it was used in many places, and removing it will require adding try except everywhere.
So i have shifted this dependency from common to torch env.

@GreatRSingh
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@GreatRSingh there seems to be some installation failure on windows, could you please resolve it

@shreyasvinaya I have discussed about it with bharath sir, it should not be a big issue as most people use deepchem on linux or WSL. I will look into fixing this issue some time later. Will have to check if the dependencies can work on windows or not.

try:
import basis_set_exchange as bse
except Exception as e:
print(f'basis-set-exchange Not Found: {e}')
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Please swap this to a logging statement. We should not have prints for errors.

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@rbharath rbharath left a comment

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There are some doctest failures related to this PR that need to be fixed. There are also other unrelated failures @GreatRSingh will fix those in a separate PR

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LGTM

@rbharath rbharath merged commit 04f4e47 into deepchem:master Jun 3, 2024
35 of 50 checks passed
shreyasvinaya pushed a commit to shreyasvinaya/deepchem that referenced this pull request Jun 5, 2024
* forward

* 3.8

* added to docs

* shift from common to torch env

* mypy fixes

* doctest fixes
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3 participants