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32 Open 78 Closed
32 Open 78 Closed
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Issues list

Add far red color code NGFF OME-NGFF (OME-Zarr format)
#216 opened Apr 5, 2024 by ziw-liu 0.2.0
2
TIFF UAPI TODOs documentation Improvements or additions to documentation μManager Micro-Manager files and metadata
#213 opened Mar 4, 2024 by ziw-liu
2 tasks
0.2.0
Add TIFF examples documentation Improvements or additions to documentation
#212 opened Feb 22, 2024 by ziw-liu 0.2.0
1
CLI to update metadata of zarr stores enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#210 opened Feb 16, 2024 by ieivanov 0.2.0
4
support ome-ngff on s3 enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#209 opened Feb 13, 2024 by d-v-b 0.2.0
5
unpin zarr versions maintenance Maintenance work
#207 opened Jan 31, 2024 by JoOkuma 0.2.0
1
Add tests for converting OpenCell datasets CI Continuous integration
#199 opened Oct 25, 2023 by ieivanov
better logging enhancement New feature or request
#188 opened Sep 25, 2023 by ieivanov 0.2.0
iohub appending does not change or raise warning regarding datatype NGFF OME-NGFF (OME-Zarr format) question Further information is requested
#187 opened Sep 11, 2023 by edyoshikun
1
iohub rechunk CLI
#184 opened Sep 1, 2023 by mattersoflight
@ziw-liu
2
ideas for next version of ndtiff reader
#183 opened Aug 24, 2023 by ieivanov
iohub info fails on MM datasets without xy_pixel_size
#180 opened Aug 24, 2023 by talonchandler 0.2.0
2
Single-page TIFF converter regression? bug Something isn't working maintenance Maintenance work μManager Micro-Manager files and metadata
#164 opened Jul 24, 2023 by ziw-liu 0.2.0
2
Test with a real HCS OME-TIFF dataset CI Continuous integration μManager Micro-Manager files and metadata
#163 opened Jul 24, 2023 by ziw-liu
5
Pydantic 2.0 maintenance Maintenance work upstream Issues with upstream dependencies
#160 opened Jul 12, 2023 by ziw-liu 0.2.0
2
Root path of BaseFOV μManager Micro-Manager files and metadata question Further information is requested
#157 opened Jun 29, 2023 by ziw-liu 0.2.0
1
Best way to save max projections and binary masks in the zarr store NGFF OME-NGFF (OME-Zarr format) question Further information is requested
#156 opened Jun 28, 2023 by nbathreya
@JoOkuma @ziw-liu
1
Per-frame metadata in UAPI help wanted Extra attention is needed
#155 opened Jun 22, 2023 by ziw-liu 0.2.0
5
The MicromanagerOmeTiffReader needs better definitions or documentation for position attributes documentation Improvements or additions to documentation enhancement New feature or request μManager Micro-Manager files and metadata
#152 opened Jun 21, 2023 by ieivanov 0.2.0
1
The MicromanagerOmeTiffReader needs methods to retrieve the image plane metadata enhancement New feature or request μManager Micro-Manager files and metadata
#151 opened Jun 21, 2023 by ieivanov 0.2.0
Test on NDTIFFv3 datasets CI Continuous integration μManager Micro-Manager files and metadata
#149 opened Jun 20, 2023 by ziw-liu
1
Contrast limit should follow the datatype of the dataset bug Something isn't working good first issue Good for newcomers NGFF OME-NGFF (OME-Zarr format)
#117 opened Apr 19, 2023 by edyoshikun
@edyoshikun
1
Add code coverage check on PRs CI Continuous integration good first issue Good for newcomers meta About how we organize the project
#115 opened Apr 17, 2023 by ziw-liu
Can convert pass the most important information from micromanager image plane metadata? enhancement New feature or request μManager Micro-Manager files and metadata
#103 opened Apr 5, 2023 by talonchandler
8
add TIFF writer enhancement New feature or request
#99 opened Mar 27, 2023 by rachel-banks
8
ProTip! Updated in the last three days: updated:>2024-05-25.