v3.1.0

[3.1.0] - 2023-07-01

Full Changelog: v3.0.0...v3.1.0

Added

• [DOC] add changelog (#1056) @Remi-Gau
• [DOC] minor doc fixes (#1020) @Remi-Gau
• [DOC] Improve doc example out stats (#1014) @Remi-Gau
• [DOC] update doc regarding FAST model as default (#985) @Remi-Gau
• [DOC] update contributors and default options in doc (#981) @Remi-Gau
• [DOC] add doc to link to transformations (#942) @Remi-Gau
• [DOC] add demo code from workshop (#935) @Remi-Gau
• [DOC] abstract OHBM 2023 (#934) @Remi-Gau
• [DOC] add argument groups to python cli (#907) @Remi-Gau
• [DOC] update FAQ (#897) @Remi-Gau
• [ENH] add proper error when a column cannot be found in participants.tsv (#1050) @Remi-Gau
• [ENH] update CPP ROI and add methods section for ROI creation (#1026) @Remi-Gau
• [ENH] update rename to store original spm name of a file in metadata (#987) @Remi-Gau
• [ENH] add hemisphere parameter to CLI (#950) @Remi-Gau
• [ENH] make it possible to update bidspm from any folder (#948) @Remi-Gau
• [ENH] use filtering of layout (#944) @Remi-Gau
• [ENH] make reports more silent (#939) @Remi-Gau
• [ENH] Add CC0 license by default to all outputs (#898) @Remi-Gau

Changed

• [ENH] overwrite files when renaming by default (#1051) @Remi-Gau
• [ENH] turn error into warning when no data to copy found (#992) @Remi-Gau

Removed

• [ENH] drop rsHRF support (#906) @Remi-Gau

Fixed

• [FIX] Fix vismotion demo (#1070) @Remi-Gau
• [FIX] Exclude from GLM specification events with onsets longer than the run duration (#1060) @Remi-Gau
• [FIX] remove dummies from preproc dataset and not raw dataset when using CLI (#1057) @Remi-Gau
• [FIX] skip smoothing when running bidspm prepoc in dryRun (#1054) @Remi-Gau
• [FIX] handle phase entity in filename (#1034) @Remi-Gau
• [FIX] fix group level results after contrasts smoothing (#1021) @Remi-Gau
• [FIX] copy to derivatives handles bids filter file and minimize re copying files that already exist (#1015) @Remi-Gau
• [FIX] allow cli to run constrat smoothing (#1012) @Remi-Gau
• [FIX] Force copy of data from fmriprep folder even if bidspm-preproc folder exists (#1009) @marcobarilari
• [FIX] report proper fold number in labelfold.tsv (#989) @Remi-Gau
• [FIX] inconsistent slice timing throw errors and not warnings (#982) @Remi-Gau
• [FIX] validate condition names early to avoid downstream error (#983) @Remi-Gau
• [FIX] validate content results structure (#980) @Remi-Gau
• [FIX] missing variable for a Filter transform should not lead to a crash (#970) @Remi-Gau
• [FIX] display error when impossible slice timing values are given (#969) @Remi-Gau
• [FIX] fix QA failures (#941) @Remi-Gau
• [FIX] bug fix 892 (#936) @Remi-Gau
• [FIX] fix python cli (#888) @Remi-Gau