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[DNM] Feature noneq cycling extends #46

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see #44
this is a trick to get CI to run

ianmkenney and others added 9 commits April 9, 2024 16:44
* Added new (de)compression + (de)serialize functions in
  feflow.utils.data
* Include compressed System, State, and Integrator as a result for the
  main simulation unit.
* SetupUnits now take `extends_data`, which when populated, spoof the
  running of the `SetupUnit._execute` method. It instead immediately
  returns results with values consistent to the end state of the
  extended SimulationUnit.
* Added new test `test_pdr_extend` to test the extension functionality.
GufeTokenizables must be JSON serializable, so including bytes is not an
option. Instead, we take the compressed bytes and encode them into a
Base64 string.
* When `mapping` is `None`, use the mapping provided by the
  ProtocolDAGResult
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Codecov Report

Attention: Patch coverage is 92.75362% with 5 lines in your changes are missing coverage. Please review.

Project coverage is 86.50%. Comparing base (05ab4bc) to head (1d46275).
Report is 5 commits behind head on main.

Files Patch % Lines
feflow/protocols/nonequilibrium_cycling.py 91.07% 5 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main      #46      +/-   ##
==========================================
- Coverage   92.06%   86.50%   -5.57%     
==========================================
  Files           7        8       +1     
  Lines         416     1430    +1014     
==========================================
+ Hits          383     1237     +854     
- Misses         33      193     +160     

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3 participants