Name		Name	Last commit message	Last commit date
Latest commit History 49 Commits
api		api
genbank-fan		genbank-fan
parsers		parsers
16s_seq_process.sh		16s_seq_process.sh
LICENSE		LICENSE
MiSeq_rdptool_map_parser.py		MiSeq_rdptool_map_parser.py
Pull_seq_from_uniprot.py		Pull_seq_from_uniprot.py
README.md		README.md
add_file_name_to_reads.py		add_file_name_to_reads.py
bin_reads.py		bin_reads.py
blast_parser.py		blast_parser.py
blast_parser_b_multi.py		blast_parser_b_multi.py
blast_parser_grep_high_evalues.py		blast_parser_grep_high_evalues.py
cdhit_clst_parser.py		cdhit_clst_parser.py
cdhit_parser_copy.py		cdhit_parser_copy.py
check_chimera_numbers.py		check_chimera_numbers.py
check_derep_seq_abundance.py		check_derep_seq_abundance.py
clst_abundance.py		clst_abundance.py
combine_clstr_blast_wrap.sh		combine_clstr_blast_wrap.sh
combine_desc_clstr.py		combine_desc_clstr.py
combine_nwk_id_w_organisms.py		combine_nwk_id_w_organisms.py
combine_taxa.py		combine_taxa.py
count_clst_abundance.py		count_clst_abundance.py
fastq_to_fasta.py		fastq_to_fasta.py
fix_index_fastqgz_names.py		fix_index_fastqgz_names.py
grep_seq_header_add_index.py		grep_seq_header_add_index.py
grep_seq_header_add_sample_name.py		grep_seq_header_add_sample_name.py
hmmalign_wrap.sh		hmmalign_wrap.sh
id_tax_split.py		id_tax_split.py
insert_desc_blast+.py		insert_desc_blast+.py
mac2unix.pl		mac2unix.pl
make_wrapper.sh		make_wrapper.sh
rdp_assem_stat_parser.py		rdp_assem_stat_parser.py
revcomp_rdp_format.py		revcomp_rdp_format.py
seq_stats_fastq_gz.py		seq_stats_fastq_gz.py
subset_I_for_pandaseq.py		subset_I_for_pandaseq.py
uniprot_dat.py		uniprot_dat.py
uniprot_euk_fungi.py		uniprot_euk_fungi.py
uniprot_id_all.py		uniprot_id_all.py
uniprot_id_microbes.py		uniprot_id_microbes.py
uniprot_id_prok.py		uniprot_id_prok.py
uniprot_ref_taxa.py		uniprot_ref_taxa.py
usearch_denovo_chim_remover.py		usearch_denovo_chim_remover.py
usearch_map_uc_parser.py		usearch_map_uc_parser.py
xander_start_quality_check.py		xander_start_quality_check.py

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This directory contains some useful scripts (solely python at the moment) for some basic file parsing.

blast table output

addition of blast descriptions

uniprot .dat parser

cdhit clstr parser

bash automation scripts

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chnops/code

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