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91 Open 138 Closed
91 Open 138 Closed
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Issues list

does smoove take other sv caller genotypes into account?
#240 opened May 14, 2024 by olivia-gc
1
Outdated version of bcftools in dockerfile: "Unsorted positions", position 0 vs. 4294967296
#239 opened Mar 12, 2024 by bartgrantham
library error in smoove
#237 opened Jan 17, 2024 by poddarharsh15
4
only histo file outputs from smoove call
#235 opened Dec 5, 2023 by Ana1335
5
lumpy_filter not on $PATH
#234 opened Nov 23, 2023 by Sreelekshmi-291
1
Failed to open -: unknown file type, panic
#233 opened Nov 9, 2023 by lilymaya
5
smoove paste error
#231 opened Oct 6, 2023 by ygwang1
5
smoove genotype - could not import: bam_hdr_destroy
#230 opened Sep 7, 2023 by heidihyang
3
Multiple issues
#229 opened Sep 6, 2023 by carsonhh
Why REF = N?
#228 opened Aug 25, 2023 by robertzeibich
1
When I use smoove annotate, I just receive a MSHQ/SHQ of -1
#225 opened Aug 11, 2023 by robertzeibich
12
smoove call fails immediately with Panic: unexpected EOF
#222 opened Jul 14, 2023 by Ax3man
2
【need help】An error occurred when running to Merge
#221 opened Jul 13, 2023 by SolarQuiltc
2
Polyploidy
#220 opened Jul 4, 2023 by goeckeritz
3
Different genotype of SV for the same sample in different batch
#219 opened Jun 19, 2023 by lemon-latte
non-SV filtering
#215 opened Mar 2, 2023 by torakichi1219
2
sanity checks for sorted and RGs
#214 opened Feb 17, 2023 by hemstrow
1
Docker image missing svtyper
#213 opened Jan 22, 2023 by mcv053
lumpy filter remove too much reads
#205 opened Oct 10, 2022 by yefanglee
6
smoove duphold error
#204 opened Sep 27, 2022 by prasundutta87
3
Error while running smoove call: panic: sam: reference already used
#202 opened Jul 18, 2022 by Giuseppe1995
5
Smoove not working !!!!!! Failed to read from standard input: unknown file type panic: write |1: broken pipe
#200 opened Jul 6, 2022 by mansi800
5
panic:gzip: invalid header
#198 opened May 4, 2022 by gaom001
8
panic: sam: duplicate program name: line 3430: "@PG\tID:SAMBLASTER\tVN:0.1.24\tCL:samblaster -i dummy.cram.readsorted.sam -o dummy.cram.samblster.sam --addMateTags"
#197 opened Apr 27, 2022 by AlecBayliff
4
Error reading index file from S3 bucket
#196 opened Apr 26, 2022 by james-guevara
2
ProTip! What’s not been updated in a month: updated:<2024-05-03.