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@berenslab

Berens Lab @ University of Tübingen

Department of Data Science at the Hertie Institute for AI in Brain Health, University of Tübingen

Popular repositories

  1. rna-seq-tsne rna-seq-tsne Public

    The art of using t-SNE for single-cell transcriptomics

    Jupyter Notebook 119 37

  2. t-simcne t-simcne Public

    Unsupervised visualization of image datasets using contrastive learning

    Python 113 12

  3. pubmed-landscape pubmed-landscape Public

    The landscape of biomedical research

    Jupyter Notebook 110 9

  4. neural_data_science neural_data_science Public

    Contains programming labs and lecture notes for the lecture "Neural Data Science"

    Jupyter Notebook 92 23

  5. uneye uneye Public

    Deep neural network for eye movement detection

    Jupyter Notebook 72 28

  6. umi-normalization umi-normalization Public

    Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology

    Jupyter Notebook 37 2

Repositories

Showing 10 of 64 repositories
  • DiffusionTempering Public
    Jupyter Notebook 0 0 0 0 Updated May 28, 2024
  • retinal-rl-models Public

    Code for the pytorch models used in the retinal-rl project (and related non-rl usages)

    Python 0 0 2 0 Updated May 28, 2024
  • RFEst Public

    A Python 3 toolbox for neural receptive field estimation using splines and Gaussian priors.

    Python 24 GPL-3.0 3 4 (1 issue needs help) 0 Updated May 23, 2024
  • medical-t-simcne Public

    This repository contains the codes to train a t-SimCNE model. This model has been shown to produce good representations on natural and medical images.

    Python 3 1 0 0 Updated May 23, 2024
  • retinal-rl Public

    Testing theories about retinal coding in reinforcement learning environments

    Jupyter Notebook 0 AGPL-3.0 1 0 0 Updated May 22, 2024
  • retimgtools Public

    Web-based tools for retinal image annotation and evaluation.

    Python 1 0 0 0 Updated May 21, 2024
  • retinal-classification Public

    non-rl experiments for the retinal-rl project

    Python 0 AGPL-3.0 0 0 0 Updated May 21, 2024
  • eff-ph Public

    Persistent homology for high-dimensional data based on spectral methods

    Jupyter Notebook 2 MIT 1 0 0 Updated May 8, 2024
  • neuroprobnum Public

    Probabilistic numerics for common neuroscience models.

    Jupyter Notebook 5 GPL-3.0 1 0 0 Updated May 7, 2024
  • iclr-dataset Public

    ICLR dataset

    Jupyter Notebook 7 0 0 0 Updated May 2, 2024
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