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31 Open 131 Closed
31 Open 131 Closed
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Issues list

How to run mavis annotate directly? bug
#359 opened Mar 28, 2024 by Weiyifan
1
Validate step not aligning reads that start with a chr to evidence that don't have a chr bug
#355 opened Aug 16, 2023 by calchoo v3.1.2
@calchoo
ValidationError: Additional properties are not allowed ('summary.cluster_radius' was unexpected)
#345 opened Dec 14, 2022 by min-codes
snakemake.exceptions.WorkflowError: Config file is not valid JSON or YAML bug documentation question
#335 opened Oct 14, 2022 by mattdoug604
@zhemingfan
12
Unused variables in validation module enhancement
#334 opened Aug 15, 2022 by zhemingfan v3.1.0
2
Docker Validation Error - tutorial full bug
#332 opened May 27, 2022 by husamia
@calchoo
3
Integrate CHM13-T2T support enhancement
#324 opened Apr 12, 2022 by zhemingfan
1 task
v3.1.0
@zhemingfan
Add compression step to MAVIS snakemake v3 enhancement performance To do with improving speed or resource usage
#323 opened Apr 6, 2022 by creisle v3.1.0
Integration information from fusion calls with transcriptomic data enhancement
#322 opened Mar 8, 2022 by zhemingfan
Straglr conversion support to json for MAVIS annotation enhancement long read support Support for long read sequence data, e.g. from Oxford Nanopore or PacBio SV caller Tickets related to support for inputs from different SV callers
#317 opened Mar 2, 2022 by sarahdada v3.1.0
1
@creisle
5
Modify DGV annotations to more general tab format to support complex SVs enhancement long read support Support for long read sequence data, e.g. from Oxford Nanopore or PacBio reference files To do with generating the reference input files
#307 opened Feb 9, 2022 by zhemingfan
4 tasks
v3.1.0
@zhemingfan
Add local assembly support for breakpoint validation in Nanopore inputs enhancement long read support Support for long read sequence data, e.g. from Oxford Nanopore or PacBio
#305 opened Feb 3, 2022 by zhemingfan
1 of 4 tasks
v3.1.0
@creisle @zhemingfan
1
Test using pyfaidx instead of Biopython for loading reference FASTA files enhancement performance To do with improving speed or resource usage
#295 opened Jan 21, 2022 by creisle
4
Viral integration awaiting reply waiting for reply from the reporter question
#259 opened Oct 13, 2021 by oghzzang
1
TypeError: __init__() missing 1 required positional argument: 'args' awaiting reply waiting for reply from the reporter bug
#258 opened Sep 29, 2021 by imsarath
@calchoo
1
enable QOS priority setting in slurm enhancement
#253 opened Jul 27, 2021 by calchoo
@calchoo
MAVIS annotation page images not loading documentation
#237 opened Feb 27, 2021 by zhemingfan
@calchoo
Use textwrap.dedent code-style good first issue refactor
#236 opened Dec 3, 2020 by creisle
TypeError: sequence item 0: expected str instance, NoneType found documentation
#234 opened Nov 20, 2020 by moldach v2.2.9
@calchoo
3
Add labelling for frame enhancement help wanted
#231 opened Nov 6, 2020 by creisle
Figures not being drawn for most chromosomes and missing annotation information awaiting reply waiting for reply from the reporter
#229 opened Oct 28, 2020 by moldach
6
Use bare asserts in tests refactor
#219 opened Jul 2, 2020 by creisle
Breakdancer input inquiry question
#214 opened Jun 23, 2020 by moldach
@creisle
5
Add support for long-read bams (genome) enhancement long read support Support for long read sequence data, e.g. from Oxford Nanopore or PacBio
#210 opened May 27, 2020 by oneillkza
2
Add support for svim and sniffles vcf as input enhancement long read support Support for long read sequence data, e.g. from Oxford Nanopore or PacBio
#208 opened May 15, 2020 by oneillkza
@oneillkza
5
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