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@barricklab

Barrick Lab

Barrick Lab at the University of Texas at Austin

Pinned

  1. breseq breseq Public

    breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a com…

    C++ 137 21

  2. LTEE-Ecoli LTEE-Ecoli Public

    Genomics resources for the Long-Term Evolution Experiment with E. coli

    GAP 14 4

  3. ostir ostir Public

    Software for predicting translation initiation rates in bacteria

    Python 10 6

  4. pLannotate pLannotate Public

    Forked from mmcguffi/pLannotate

    Webserver and command line tool for annotating engineered plasmids

    Python 9 4

  5. brefito brefito Public

    Snakemake pipelines for assembling and annotating bacterial reference sequences

    Python 1

Repositories

Showing 10 of 44 repositories
  • igem2019 Public

    Scripts and datasets for measuring BioBrick plasmid burden.

    R 0 0 0 0 Updated Jun 1, 2024
  • breseq-ext-cnv Public

    breseq copy number variation extension

    Python 0 GPL-2.0 0 0 0 Updated May 29, 2024
  • breseq Public

    breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R.

    C++ 137 GPL-2.0 21 43 1 Updated May 28, 2024
  • brefito Public

    Snakemake pipelines for assembling and annotating bacterial reference sequences

    Python 0 MIT 1 0 0 Updated May 18, 2024
  • ostir Public

    Software for predicting translation initiation rates in bacteria

    Python 10 GPL-3.0 6 3 (1 issue needs help) 0 Updated May 14, 2024
  • cryptkeeper Public

    Tool for visualizing unintentional bacterial gene expression from a DNA sequence

    Python 1 GPL-3.0 0 1 0 Updated May 14, 2024
  • promoter-calculator Public
    Python 1 0 0 0 Updated Mar 13, 2024
  • RhoTermPredict Public Forked from MarcoDiSalvo90/RhoTermPredict
    Python 0 AGPL-3.0 11 0 0 Updated Mar 13, 2024
  • LTEE-Ecoli Public

    Genomics resources for the Long-Term Evolution Experiment with E. coli

    GAP 14 CC0-1.0 4 1 0 Updated Feb 28, 2024
  • ND-Bartonella-EE Public

    Code for analyzing mutations that evolved in Bartonella bacteria passaged through rodents in the laboratory.

    GDScript 0 0 0 0 Updated Jan 7, 2024
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